Guided tour Guided tour of of publBio publBio - - PowerPoint PPT Presentation

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Guided tour Guided tour of of publBio publBio - - PowerPoint PPT Presentation

Guided tour Guided tour of of publBio publBio http://publbio.iucr.org http://publbio.iucr.org publBio requires a login and registration registration is simple your publBio home page shows all your projects start from scratch or enter a


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http://publbio.iucr.org http://publbio.iucr.org

Guided tour Guided tour

  • f
  • f

publBio publBio

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publBio requires a login and registration

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registration is simple

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your publBio home page shows all your projects

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starting a project is simple

start from scratch

  • r

enter a PDB code

  • r

upload an mmCIF

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current and submitted projects can be modified

rename edit preview copy delete submit

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data can be reported for structural studies

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  • r just for crystallization studies
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clicking on a tab opens that part of the article

The text tab consists of six tabs title authors abstract article body acknowledgements references

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author details may be added manually

new author tabs may be added authors may be reordered authors can have multiple addresses

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authors may be added by searching

click on the search results to add an author author search is carried out

  • n the World Directory of

Crystallographers

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authors may be added from previous projects

publBio maintains a record

  • f author details used in

previous projects click on a name to add details to the current project

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text fields have a WYSIWYG interface

the abstract tab contains the following fields keywords synopsis abstract

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special characters can be inserted

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headings and subheadings can be indicated

tabs form the main headings subheadings are inserted by the WYSIWYG editor

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references in the text can be checked

Check that references in the text are in the reference list Check that references in the reference list are in the text

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a reference checking report is provided

confidently identified references are checked in green possible citation problems are highlighted

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mathematics may be input with an equation editor or as TeX

complex mathematics can be handled

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equations are displayed inline

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spell checking is also available

possible spelling problems are highlighted

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reference list formatting may be checked

possible problems with reference list formatting are highlighted

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citation databases may be checked

searches can be made on IUCr Journals PubMed personal database

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results are displayed in a separate window

references can be added from search results with a single mouse click

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references may also be stored in a personal database

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experimental data can be edited in the tables tabs

The tables tab consists of a number of tabs macromolecule crystallization crystal data data collection data-collection statistics phasing refinement

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input forms suggest possible wording

data from previous projects are remembered standard descriptions of methods are also offered

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crystallization conditions can be added from a database

standard commercial crystallization screens can be looked up

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crystallization conditions can be added manually

the software predicts the names of standard crystallization components

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forms request standard information for crystallization studies

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additional information may be added using “more” links

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each input box has an associated “help” window

Help is provided by extra “help” windows and by additional “help” links

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figures can be added as graphics files

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  • r can be created as interactive JMol figures
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  • r can be created as interactive JMol figures
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publBio provides html output

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publBio also provides output in WORD format

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http://publbio.iucr.org http://publbio.iucr.org