Escherichia coli Terry Arthur Research Microbiologist Meat Safety - - PowerPoint PPT Presentation

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Escherichia coli Terry Arthur Research Microbiologist Meat Safety - - PowerPoint PPT Presentation

Shiga toxin-producing Escherichia coli Terry Arthur Research Microbiologist Meat Safety and Quality Research Unit U.S. Meat Animal Research Center Use of product names by USDA implies no An equal opportunity approval to the provider and


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Terry Arthur Research Microbiologist Meat Safety and Quality Research Unit U.S. Meat Animal Research Center

Shiga toxin-producing Escherichia coli

An equal opportunity provider and employer Use of product names by USDA implies no approval to the exclusion of others that may also be suitable

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Outline

  • Background
  • Non-O157 STEC prevalence pre- and post-harvest
  • Non-O157 STEC response to interventions
  • Detection difficulties
  • Knowledge gaps
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Shiga-like toxin (SLTEC) Vero toxin (VTEC) Shiga toxin (STEC)

Nomenclature

  • Shiga toxin initially discovered as a product of Shigella

dysenteriae

  • Antibodies against Shiga toxin shown to inhibit cytotoxicity of

an E. coli strain

  • E. coli strain discovered to be toxic to vero cells

Enterohemorrhagic E. coli (EHEC) Cause disease in humans

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Y Y

Lipopolysaccharide (LPS) Flagella = H antigen = O antigen H1-H56 O1-O185

  • E. coli serotyping

O157:H7 O111:H8 O26:H11

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Non-O157 STEC – emerging?

  • Initial STEC isolation from clinical cases were O111 and

O26 strains, not O157. (Konowalchuk et al. 1977)

  • Retrospective analysis found STEC O20 isolates dating

from the early 1970’s. (Bettelheim et al. 1982)

  • A 1954 disease outbreak in New England thought to be

caused by STEC O111, but no isolates were screened for Shiga toxin carriage. (Johnson et al. 1996)

  • O157:H7 not associated with human disease until 1983.

(Riley et al. 1983)

  • Retrospective search identified O157:H7 isolates in CDC

repository from 1975. (Wachsmuth et al. 1997)

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Non-O157 STEC

Estimated to cause one-half of the clinical EHEC cases. Over 200 STEC serotypes have been isolated from cattle. KG = The proportion of non-O157 STEC able to cause disease in humans is unknown.

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STEC emphasis progression

  • Initially O157:H7
  • Then O157:H7 and non-O157
  • Now O157, Top 6 non-O157, & the rest of the non-O157 (non-Top 6

non-O157) – (O26, O45, O103, O111, O121, and O145)

  • Breadth of STEC strains viewed as a continuum.
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A

O157:H7 and O157:NM, which are common causes of outbreaks and HUS in most countries.

B

Associated with outbreaks and HUS, but less frequently than seropathotype A (CDC Top-6).

C

Associated with sporadic HUS but not epidemics.

D

Associated with diarrhea but not with outbreaks or HUS.

E

Multiple STEC serotypes that have never been associated with human disease and appear to be linked exclusively to animal infections in an agricultural setting.

To assess the clinical and public health risks associated with non-O157 STEC a seropathotype classification defined.

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CDC Top Six non-O157 STEC Serotypes

O26 O45 O103 O111 O121 O145 :H11 or NM :H2 or NM :H2, H11, H25 or NM :H8 or NM :H19 or H7 :NM 22% 7% 12% 16% 9% 5% 71%

The cause of 71% of non-O157 diseases in the US

Brooks et al, 2005, JID 192:1422.

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STEC virulence factors

Shiga toxins – two types: stx1 and stx2

  • ribosome inactivating proteins

Intimin (eae) – attachment to epithelial cells tir/espE - translocated intimin receptor espA and espB required for intimate attachment/attaching and effacing (AE) lesions characteristic of STEC infection hlyA - pO157 enterohemolysin releasing hemoglobin from red blood cells katP - pO157 catalase peroxidase that defends the cell against oxidative damage etpD - pO157, encodes part of a type II secretory pathway transporting proteins across the outer membrane lpf - chromosomal long polar fimbriae espP - pO157 extracellular serine protease autotransporter saa - pO113 STEC agglutinating adhesion subA – subtilase cytotoxin – serine protease KG = What are essential virulence components?

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Virulence of

  • rganism

Determinants of infection

  • E. coli O157:H7
  • E. coli + stx

“Interestingly, different virulence gene profiles were detected within strains from the same serotype, for example, O26:H11 (10 isolates) displayed 3 different virulence profiles: stx1/stx2/stx2d/eaeA/hlyA/tir/lpfAO113/espP/toxB/iha (7 isolates), stx1/eaeA/hlyA/tir/lpfAO113/espP/toxB/iha (2 isolates) and stx1/eaeA/hlyA/lpfAO113/espP/toxB/iha (1 isolate).” Monaghan et al., 2011

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Virulence of

  • rganism

Determinants of infection

  • E. coli O157:H7
  • E. coli + stx

Dose Immune status

  • f individual
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http://bites.ksu.edu/nonO157outbreaks

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Since 1994, there have been approximately 31 non- O157 STEC outbreaks in the U.S. From 2000 to 2006 the CDC reported an average of 40 E. coli O157:H7 outbreaks per year.

Outbreaks

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Outline

  • Background
  • Non-O157 STEC prevalence pre- and post-harvest
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Country Prevalence Method Reference United States 5.9% colony hybridization Cray et al. 1996 19% vero cell assay Wells et al. 1991 Argentina 37% vero cell assay Blanco et al. 1997 Canada 38.2% vero cell assay Van Donkersgoed et al. 1999 France 70% PCR Pradel et al. 2000 Japan 78.9% PCR Shinagawa et al. 2000 100% nested PCR Kobayashi et al. 2001

Prevalence of non-O157 STEC in Cattle “Of the 1800 samples analysed, 40% (480/1200) of faecal and 27% (162/600) of soil samples were stx1 and/or stx2 positive. STEC were cultured from 1.9% (23/1200) of faecal and 0.7% (4/600) of soil samples …” Monaghan et al., 2011

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Prevalence of STEC in Cattle Calves appear to be more susceptible to STEC colonization than older cows. STEC strains harboring stx1 are more commonly isolated from cattle than those harboring stx2. Bovine-related STEC isolates lack accessory virulence factors intimin and hemolysin EHEC serotypes (O157:H7, O111:H8, and O26:H11) are infrequently isolated form cattle when using unbiased methods.

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bovine human

  • Majority of bovine STEC strains lack accessory virulence

factors and are potentially less virulent.

  • Cannot distinguish between virulent and nonvirulent STEC.
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Colonization

  • Tissue tropism difference reported for O157 and non-

O157 STEC (van Dieman et al. I&I 2005)

– 4-day old calves inoculated with 1010 CFU

  • O26 = spiral colon
  • O157 = distal colon/RAJ
  • Later work with tissue explants on 6 wk old calves

determines similar binding patterns. (Girard et al. AEM 2007)

– O26 and O111 can bind at RAJ – O157 can adhere and induce A/E lesions at intestinal sites other than the terminal rectum

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Colonization

KG = Will swab sampling of RAJ be useful for detecting non-O157 STEC? Naturally colonized dairy cattle shown to excrete non-O157 STEC (O113, O22) for >6 months (Monrath et al. 2011) Persistent shedder – yes, Super shedder - ?

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Prevalence of STEC by Sample Type

Barkocy-Gallagher et al., 2003.

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What do we know from the processing plant studies regarding the Top6 STEC

Arthur et al., 2002; Barkocy-Gallagher et al., 2003; Bosilevac et al., 2007.

Hides Pre-evis Final Trim % stx positive 91.7 96.5 16.2 30.0 % STEC isolate 56.6 58.0 8.9 5.7 % Top 6 ND 11.1 0.0 0.0

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Prevalence of Non-O157 contamination of post-intervention beef cattle carcasses

U.S.1 France2 Hong Kong3 Total Samples 326 851 986

1Arthur et al. 2002. 2Rogerie et al. 2001. 3Leung et al. 2001.

Total non-O157 STEC positive 27 (8.3) 16 (1.9) 17 (1.7) PCR positive for stx genes 43 (13.4)3 91 (10.7) 112 (11.4)

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stx1 152 135 17 stx2 93 78 15 stx1, stx2 15 15 stx1, eae 2 2 stx1, hlyA 8 3 5 stx2, hlyA 19 17 2 stx1, stx2, hlyA 31 23 8 stx1, stx2, eae 1 1 stx1, eae, hlyA 8 6 2 stx2, eae, hlyA 20 20 STEC virulence factors # of Isolates Preevis Post stx1, stx2, eae, hlyA 12 10 2 Total 361 310 51

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Prevalence of STEC in beef

Number (%) of ground beef samples Total stx positive STEC confirmation Potential EHEC 4,133 (100) 1,006 (24.3) 300 (7.3) 10 (0.24)

Bosilevac and Koohmaraie, 2011.

n 220 223 256 487 % stx gene 30 9.7 28 30 % STEC isolated 3.6 1.8 15.6 5.7 % Potential EHEC isolated 0.9 2.3 1.0 Australia Uruguay New Zealand USA

Bosilevac et al., 2007.

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Prevalence of STEC in beef Although the prevalence of STEC in retail ground beef is much higher than that of E. coli O157:H7, which is a member of the group, it does not follow that the public health impact of the group is higher by the same magnitude. (Samadpour et al. 2002) 16.8% retail meat samples positive for stx genes (n= 296, Samadpour et al. 2002) However, it is important to note that mere possession of the Stx toxin gene is not sufficient to convert a nonpathogenic E. coli strain into a pathogen.

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Outline

  • Background
  • Non-O157 STEC prevalence pre- and post-harvest
  • Non-O157 STEC response to interventions
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Genome comparison

Ogura et al. PNAS 2009

EHEC strains carry large virulence plasmid (pEHEC)

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Genome comparison

EHEC Commensal EAEC ExPEC EPEC Shigella Ogura et al. PNAS 2009

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Genome comparison

These results indicate that the whole-gene repertoires of the EHECs are more similar to each other than to any of the other strains. Ogura et al. PNAS 2009 KG = What are the selective pressures and mechanisms driving the development of EHEC?

  • Does parallel evolution have implications for non-virulence-related attributes?
  • O104 outbreak – horizontal transmission
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Previous conclusions

  • “Similarly, E. coli O111:H8 and E. coli O26:H11 associated with

beef surfaces were reduced by the interventions to approximately the same extent as E. coli O157:H7. Based on these findings, interventions used by the meat industry to reduce Salmonella spp. and E. coli O157:H7 appear to be effective against Salmonella Typhimurium DT 104 and non-O157:H7 STEC.” Cutter and Rivera-

Betancourt J. Food Prot. 2000.

  • “When the E. coli isolates were grouped as O157 or non-O157

strains, there was no statistical difference between the groups in their sensitivities to D-lactate. However, the non-O157 strains were more susceptible to L-lactate than were the O157strains.” Leitsch and

Stewart Appl. Environ. Microbiol. 2002.

  • “This indicates that where a process (based on low pH or heat) is

validated to ensure absence of E. coli O157:H7, the same conditions should also be effective against E. coli O26.” Duffy et al. Int. J. Food

  • Microbiol. 2006.
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Effect of Peroxyacetic Acid (POAA)

  • n Reduction of STEC Strains

1 2 3 4 O157 O26 O103 O111 O145 1.2 a 1.5 a 1.0 a 1.1 a 1.5 a Log reduction

STEC Pool 1 STEC Pool 2

1 2 3 4 O157 O45 O121 0.9 a 1.1 a 0.9 a

200 ppm, pH = 2.8 (Inspexx™)

  • Dr. Nor Kalchayanand unpublished

http://www.amif.org/ht/d/sp/i/26883/pid/26883#Ecoli

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Outline

  • Background
  • Non-O157 STEC prevalence pre- and post-harvest
  • Non-O157 STEC response to interventions
  • Detection difficulties
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Family: Enterobacteriaceae Gram negative Rod-shaped Motile Ferment: several sugars including sorbitol b-glucuronidase positive

  • E. coli
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Family: Enterobacteriaceae Gram negative Rod-shaped Motile: flagella Ferment: several sugars not sorbitol b-glucuronidase negative Resistant to tellurite, novobiocin, and vancomycin

  • E. coli O157

Produce Shiga toxins Infectious dose 10-100 organisms

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Family: Enterobacteriaceae Gram negative Rod-shaped Motile: flagella Ferment: several sugars including sorbitol b-glucuronidase positive

Non-O157 STEC

Produce Shiga toxins

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Non-O157 STEC Detection

  • Sampling is the same as for O157
  • Enrichment is the same as for O157

Detection has focused on identification of strains carrying the Shiga toxin genes or expressing the toxin proteins PCR EIA Colony hybridization Vero cell assay

  • No universal immunomagnetic separation method available
  • Cannot use sorbitol-based detection
  • Cannot use b-glucuronidase-based detection
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Testing

  • Detection methods for O157:H7 should not

be confused with non-O157 methods

  • Sensitivity is comparable, specificity is not
  • Non-O157 STEC confirmation is as much

by chance as by design

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O26:H11 stx eae O36:H20 eae O26:H5 O13:H8 stx Presumptive positive Presumptive positive

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grounda beef groundb beef trimb stx 24.3% 5.5% 15% stx and eae 10.1% 1.5% 4.7%

Screening of commercial beef trim for STEC

aBosilevac and Koohmaraie, 2011 bHill et al. 2011

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Detection needs

  • Genetic markers specific for top6 or potential EHEC

strains

– Dr. Jim Bono, USMARC

  • Confirmation method that is:

– Specific for target strains – Rapid – Not inhibitory to any of the target strains – Dr. Mick Bosilevac, USMARC

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Outline

  • Background
  • Non-O157 STEC prevalence pre- and post-harvest
  • Non-O157 STEC response to interventions
  • Detection difficulties
  • Knowledge gaps
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Knowledge Gaps

  • What are the selective pressures and mechanisms driving the development
  • f EHEC?
  • Does parallel evolution have implications for non-virulence-related attributes?
  • O104 outbreak – horizontal transmission
  • What are the determinants of STEC risk?
  • Need genome sequences from across the STEC continuum.
  • Do non-O157 STEC colonize the RAJ?
  • Will aid in preharvest intervention design.
  • Do non-O157 STEC attain super shedding levels through natural

colonization?

  • How do non-O157 STEC respond to current and emerging pre-harvest

interventions? Answered

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Knowledge Gaps

  • Do EHEC specific targets exist for detection?
  • We must move detection methodology forward.
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