SLIDE 1
ENCODE DAC Update
DAC Update – ENCODE 2019
DAC PIs
Zhiping Weng Mark Gerstein
DAC co-Is Project manager
Jill Moore Manolis Kellis Bill Noble Shirley Liu Anshul Kundaje
Asilomar Conference Center
Roderic Guigó Rafa Irizarry
Some extracted slides from DAC presentation ENCODE DAC Update DAC - - PowerPoint PPT Presentation
Some extracted slides from DAC presentation ENCODE DAC Update DAC - - PowerPoint PPT Presentation
Some extracted slides from DAC presentation ENCODE DAC Update DAC PIs DAC co-Is Project manager Manolis Kellis Shirley Liu Rafa Irizarry Zhiping Weng Jill Moore Anshul Kundaje Roderic Guig Bill Noble Mark Gerstein Asilomar
SLIDE 2
SLIDE 3
STARRPeaker: unbiased identification of enhancers from WHG-STARR-seq
doi: https://doi.org/10.1101/694869 (bioRxiv)
Donghoon Lee Poster #38
Gerstein DAC Update – ENCODE 2019
SLIDE 4
ESPRNN: Epigenome-base Splicing Prediction using a Recurrent Neural Network
https://github.com/gersteinlab/esprnn Gerstein DAC Update – ENCODE 2019
SLIDE 5
Joint TF-RBP regulatory network hierarchy
Gerstein DAC Update – ENCODE 2019 Zhang…Gerstein (2020) Nature Communications
Manuscript currently available on bioRXiv
SLIDE 6
Metrics for Network Change
Zhang…Gerstein (2020) Nature Communications
LDA Topics GM12878 v K562
Changes in TF networks between cell types
Gerstein DAC Update – ENCODE 2019
Manuscript currently available on bioRXiv
SLIDE 7
Rewiring index for different networks
Gerstein DAC Update – ENCODE 2019 Zhang…Gerstein (2020) Nature Communications