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ITU/FAA Faculty of Aeronautics and Astronautics Numerical Simulation of Drosophila Flight Based on Arbitrary Lagrangian Eulerian (ALE) Method Belkis ERZINCANLI & Mehmet SAHIN 65th Annual Meeting


  1. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Simulation of Drosophila Flight Based on Arbitrary Lagrangian Eulerian (ALE) Method Belkis ERZINCANLI & Mehmet SAHIN 65th Annual Meeting of the APS Division of Fluid Dynamics November 18-20, 2012 – San Diego,CA. Aeronautical Engineering Department, Faculty of Aeronautics and Astronautics, Istanbul Technical University, 34469, Maslak/Isatanbul, TURKEY

  2. ITU/FAA Faculty of Aeronautics and Astronautics Contents • Motivations • ALE Formulation • Governing equations • Discrete Geometric Conservation Law (GCL) • 3D Numerical discretization • Iterative solver • Numerical Validations • Kovasznay flow • The flow past an oscillating circular cylinder in a channel • The flow induced due to a horizontally oscillating sphere • The Numerical Simulation of Flow Field Around Drosophila • Conclusions and Future Work APS DFD 2012 2

  3. ITU/FAA Faculty of Aeronautics and Astronautics The Fruit Fly , Drosophila Debat et al., Evolution, 60(12), 2006, pp. 2529 – 2538 APS DFD 2012 3

  4. ITU/FAA Faculty of Aeronautics and Astronautics Insect Flight Aerodynamics A comparison of 2-D linear translation vs 3-D Clap & Fling flapping translation S ane, S.P.,”The Aerodynamics of Insect Flight”, The Journal of Experimental Biology 206,4191-4208, (2003). Stable attachment of the leading edge vortex APS DFD 2012 4

  5. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Aprroaches Used for Moving Boundary Flow Problems • Immersed Boundary Method (IBM) : This approach solves Navier-Stokes equations on a Cartesian mesh with a moving immersed body (Miller & Peskin, 2004; Gilmanov & Sotiropoulos, 2005; Mittal et al., 2006). • Fictious Domain Method : This approach uses Eulerian mesh and the body motion is represented using the distributed Lagrangian multiplier method. • Overset (Chimera) Grid Method : This method uses several body fitted meshes inside the fluid domain and an interpolation algorithm is used between the neighbouring meshes (Liu and Aono, 2009). • Arbitrary Lagrangian-Eulerian (ALE) Method : The mesh follows the interface between the fluid and solid boundary and the governing equations are discretized on a moving/deforming mesh (Johnson, 2006; Ramamurti & Sandberg, 2002). APS DFD 2012 5

  6. ITU/FAA Faculty of Aeronautics and Astronautics A Fully Coupled Parallel Unstructured Finite Volume Method based on ALE Formulation • In the Arbitrary Lagrangian-Eulerian (ALE) method, the interface between the solid and fluid is sharply represented. • The mesh movement has to satisfy a special condition called Geometric Conservation Law (GCL) in order to maintain the accuracy and the stability of the time integration scheme. • An unstructured ALE method based on the side-centered finite volume technique has been developed for parallel large-scale moving boundary problems. • The present arrangement of the primitive variables leads to a stable numerical scheme and it does not require any ad-hoc modifications in order to enhance the pressure-velocity coupling. • The most appealing feature of present primitive variable arrangement is the availability of very efficient multigrid solvers. • A fully coupled implicit iterative solver is used for large-scale calculations since the CFL restriction may lead to inadmissible time steps on deforming meshes and does not introduce any splitting error when the advection- diffusion operator is treated impicitly. APS DFD 2012 6

  7. ITU/FAA Faculty of Aeronautics and Astronautics Mathematical and Numerical Formulation The incompressible Navier-Stokes equations that govern the viscous fluid flow of an arbitrary moving Eulerian Lagrangian control volume Ω (t) with boundary ∂Ω (t) can be written in Cartesian coordinate system in dimensionless form as follows: The continuity equation : The momentum equation : Three-dimensional dual volume Grid velocity APS DFD 2012 7

  8. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Discretization Side-centered finite volume method • A stable numerical scheme with exact mass conservation • No ad-hoc modifications for pressure-velocity coupling • Very efficient multigrid solvers are available (a) Two-dimensional dual volume (b) Three-dimensional dual volume APS DFD 2012 8

  9. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Discretization Cont’d The contributions for the x -momentum equation for the right element: The time derivation is the volume of the pyramid between points APS DFD 2012 9

  10. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Discretization Cont’d The convective term due to fluid motion are the area vectors of the dual volume triangular surfaces. are the velocity vectors defined at the mid- point of each dual volume surface area. APS DFD 2012 10

  11. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Discretization Cont’d The convective term due to mesh motion First-order backward difference is used for grid velocity Geometric conservation law satisfied. APS DFD 2012 11

  12. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Discretization Cont’d The pressure term 2nd order Taylor series expansion is used for the pressure values at . APS DFD 2012 12

  13. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Discretization Cont’d The viscous term Gauss-Green theorem is used for the gradient terms: APS DFD 2012 13

  14. ITU/FAA Faculty of Aeronautics and Astronautics Numerical Discretization Cont’d The continuity equation is integrated within each hexahedral elements and evaluated using the mid-point rule on each of the element faces where is the hexahedral element surface area vector and u , v and w are the velocity vector components defined at the mid-point of each hexahedral element face. The discretization of above equations leads to a saddle point problem of the form: where, are the convection diffusion operators, is the pressure gradient operator and is the divergence operator. APS DFD 2012 14

  15. ITU/FAA Faculty of Aeronautics and Astronautics Iterative Method The preconditioner matrix is Where .For the inverse of the scaled Laplacian S, we use two-cycle AMG solver provided by the HYPRE library, a high performance preconditioning package developed at Lawrence Livermore National Laboratory, which we access through the PETSC library. APS DFD 2012 15

  16. ITU/FAA Faculty of Aeronautics and Astronautics TEST CASE I: 2D Kovasznay Flow The spatial convergence of the error with mesh refinement . APS DFD 2012 16

  17. ITU/FAA Faculty of Aeronautics and Astronautics TEST CASE II: An Oscillating Circular Cylinder in a Channel • The location of the cylinder center • Amplitude and frequency of the oscillation • Time step • Reynolds number • 70,667 quadrilateral elements • 71,349 vertices • 354,699 total DOF APS DFD 2012 17

  18. ITU/FAA Faculty of Aeronautics and Astronautics TEST CASE II: An Oscillating Circular Cylinder in a Channel t=20.0s t=21.0s t=22.0s t=23.0s The computed u -velocity vector component contours with streamtraces. APS DFD 2012 18

  19. ITU/FAA Faculty of Aeronautics and Astronautics TEST CASE II: An Oscillating Circular Cylinder in a Channel The comparion of c d and c l plots with results from Wan and Turek (JCP, 2007) . APS DFD 2012 19

  20. ITU/FAA Faculty of Aeronautics and Astronautics TEST CASE III: An Oscillating Sphere in a Cubic Cavity • The location of the sphere • Time step • Reynolds number (Gilmanov & Sotiropoulos , 2005) The Reynolds number is based on the sphere diameter and the maximum sphere velocity. • 473,856 hexahedral elements • 492,596 vertices • 4,794,264 total DOF APS DFD 2012 20

  21. ITU/FAA Faculty of Aeronautics and Astronautics TEST CASE III: An Oscillating Sphere in a Cubic Cavity • The location of the sphere x ( t ) = h [1- cos (2 ฀ t )] h = 0.125 D The instantaneous streamtraces with u- velocity component contours at different phases over a cycle for a rigid sphere oscillating in a cubic cavity at Re = 20: t=0, t=T/4, t=T/2 and t=3T/4 . The time variation of drag coefficient for a rigid sphere oscillating in a cubic cavity at Re = 20. APS DFD 2012 21

  22. ITU/FAA Faculty of Aeronautics and Astronautics The Numerical Simulation of Flow Field Around Drosophila Robofly experiment of M. Dickinson (CalTech / ICB), Science (1999). APS DFD 2012 22

  23. ITU/FAA Faculty of Aeronautics and Astronautics The Numerical Simulation of Flow Field Around Drosophila The approximated kinematics of the Drosophila wing motion : Downstroke motion at times t =0, Upstroke motion at times t =0.5, 0.6, 0.1, 0.2, 0.3, 0.4 and 0.5. 0.7, 0.8, 0.9 and 1. APS DFD 2012 23

  24. ITU/FAA Faculty of Aeronautics and Astronautics The Numerical Simulation of Flow Field Around Drosophila [a] [b] The initial computational fine mesh [a] and the control points mesh used for RBF based mesh deformation algorithm [b] for the Drosophila wing . The computational mesh consists of 1,300,358 vertices and 1,276,666 hexahedral elements (12,837,448 DOF). APS DFD 2012 24

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