Funnel Heap - A Cache-Oblivious Priority Queue Gerth Stlting Brodal - - PowerPoint PPT Presentation

Funnel Heap

• A Cache-Oblivious Priority Queue

Gerth Stølting Brodal Rolf Fagerberg

BRICS

University of Aarhus

Thirteenth International Symposium on Algorithms and Computation Vancouver, BC, Canada, November 22, 2002

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Outline of talk

• Cache-oblivious model
• Cache-oblivious results
• Cache-oblivious priority queues
• Funnel heap

– k - merger – the data structure – operations

Brodal, Fagerberg: Funnel Heap

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The Classic RAM Model

The RAM model:

CPU A R M

Add: O(1) Mult: O(1) Mem access: O(1)

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The Classic RAM Model

The RAM model:

CPU A R M

Add: O(1) Mult: O(1) Mem access: O(1) Real life:

Disk CPU L2 L1 A R M C a c C c a e h h e

Bottleneck: transfer between two highest memory levels in use

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The I/O Model

CPU External I/O Memory y r

• m

e M

N = problem size M = memory size B = I/O block size

Aggarwal and Vitter 1988

• One I/O moves B consecutive records from/to disk
• Cost: number of I/Os

Scan(N) = O(N/B) Sort(N) = O

N

B logM/B N B

• Brodal, Fagerberg: Funnel Heap

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Cache-Oblivious Model

Frigo, Leiserson, Prokop, Ramachandran 1999

• Program in the RAM model
• Analyze in the I/O model (for arbitrary B and M)

Advantages

• Optimal on arbitrary level ⇒ optimal on all levels
• B and M not hard-wired into algorithm

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Cache-Oblivious Results

• Scanning ⇒ stack, queue, selection, . . .
• Sorting, matrix multiplication, FFT

Frigo, Leiserson, Prokop, Ramachandran, FOCS’99

• Cache oblivious search trees

Prokop 99 Bender, Demaine, Farach-Colton, FOCS’00 Rahman, Cole, Raman, WAE’01 Bender, Duan, Iacono, Wu and Brodal, Fagerberg, Jacob, SODA’02

• Priority queue and graph algorithms

Arge, Bender, Demaine, Holland-Minkley, Munro, STOC’02

• Computational geometry

Bender, Cole, Raman, ICALP’02 Brodal, Fagerberg, ICALP’02

• Scanning dynamic sets

Bender, Cole, Demaine, Farach-Colton, ESA’02

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Priority Queues

Insert(e) DeleteMin Classic RAM:

• Heap:

O(log2 n) time

Williams 1964

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Priority Queues

Insert(e) DeleteMin Classic RAM:

• Heap:

O(log2 n) time, O

• log2

N M

• I/Os

Williams 1964

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Priority Queues

Insert(e) DeleteMin Classic RAM:

• Heap:

O(log2 n) time, O

• log2

N M

• I/Os

Williams 1964

I/O model:

• Buffer tree: O

1

B logM/B N B

• = O

Sort(N)

N

• I/Os

Arge 1995

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Cache-Oblivious Priority Queues

• O

1

B logM/B N B

• I/Os

Arge, Bender, Demaine, Holland-Minkley, Munro 2002

– Uses sorting and selection as subroutines – Requires tall cache assumption, M ≥ B2

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Cache-Oblivious Priority Queues

• O

1

B logM/B N B

• I/Os

Arge, Bender, Demaine, Holland-Minkley, Munro 2002

– Uses sorting and selection as subroutines – Requires tall cache assumption, M ≥ B2

• Funnel heap

This talk – Uses only binary merging – Profile adaptive, i.e. O

1

B logM/B Ni B

• I/Os

Ni is either the size profile, max depth profile, or #insertions during the lifetime of the ith inserted element

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Merge Trees

✲ ✸ s

Binary merger

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Merge Trees

✲ ✸ s

Binary merger

✲ ✍ ◆ ✲ ✣ ❫ ✲ ✸ s ✲ ✶ q ✲ ✶ q ✲ ✸ s ✲ ✶ q ✲ ✶ q ✲ ✣ ❫ ✲ ✸ s ✲ ✶ q ✲ ✶ q ✲ ✸ s ✲ ✶ q ✲ ✶ q

Merge tree

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Merging Algorithm

Fill(v) while out-buffer not full if left in-buffer empty Fill(left child) if right in-buffer empty Fill(right child) perform one merge step ✲ ✍ ◆ ✲ ✣ ❫ ✲ ✸ s ✲ ✶ q ✲ ✶ q ✲ ✸ s ✲ ✶ q ✲ ✶ q ✲ ✣ ❫ ✲ ✸ s ✲ ✶ q ✲ ✶ q ✲ ✸ s ✲ ✶ q ✲ ✶ q

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k - merger

k3 k

→

B1 B0 · · · · · · M1 M√ k M0 B√ k · · · M0 M1 B1 B√ k M√ k B2 M2 B0

Recursive memory layout Recursive defi nition of buffer sizes

Lemma: O( k3

B logM(k3) + k) I/Os per invocation (if M ≥ B2) Frigo, Leiserson, Prokop, Ramachandran 1999 Brodal, Fagerberg 2002

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The Priority Queue

✛ ✻ ✻ ✻✻ ✛ ✻ ✻ ✻✻ ✻

··

✛ ✛ · · · ✛ ✻ ✻ ✻✻ ✻

· · ·

✛ ✛ · · · ✛ ✻ ✻ ✻✻ ✻

· · · ·

✛

A1 B1 s1 s1 v1 Ai vi Bi ki si si si Link i I

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The Priority Queue

✛ ✻ ✻ ✻✻ ✛ ✻ ✻ ✻✻ ✻

··

✛ ✛ · · · ✛ ✻ ✻ ✻✻ ✻

· · ·

✛ ✛ · · · ✛ ✻ ✻ ✻✻ ✻

· · · ·

✛

A1 B1 s1 s1 v1 Ai vi Bi ki si si si Link i I

ki+1 ≈ k4/3

i

si+1 ≈ s4/3

i

ki ≈ s1/3

i

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The Priority Queue

✛ ✻ ✻ ✻✻ ✛ ✻ ✻ ✻✻ ✻

··

✛ ✛ · · · ✛ ✻ ✻ ✻✻ ✻

· · ·

✛ ✛ · · · ✛ ✻ ✻ ✻✻ ✻

· · · ·

✛

A1 B1 s1 s1 v1 Ai vi Bi ki si si si Link i I

ki+1 ≈ k4/3

i

si+1 ≈ s4/3

i

ki ≈ s1/3

i

In total: A single binary merge tree

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Operations — DeleteMin

·· · · · · · · · · · · · · · A1 v1 I

• If A1 is empty, call Fill(v1)
• Search I and A1 for minimum element

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Operations — Insert

·· · · · · · · · · · · · · · ki I c1 c2 ci

• Insert in I
• If I overflows, call Sweep(i) for first i where ci ≤ ki

Sweep ≈ addition of one to number c1c2..ci..cmax si = s1 + i−1

j=1 kjsj

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Analysis

·· · · · · · · · · · · · · ·

We can prove:

• Number N of insertions performed:

simax ≤ N

• Number of I/Os per Insert for link i:

O

• 1

B logM/B si

• By the doubly-exponentially growth of si,

the total number of I/Os per Insert is O

∞

• k=0

1 B logM/B N (3/4)k

• = O

1

B logM/B N

• DeleteMin is amortized for free

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Profile Adaptive

·· · · · · · · · · · · · · ·

• Modify Insert to apply Sweep(i) for

– first i where ci ≤ ki, or – link i is at most half-full, i.e. there exists Sij1 and Sij2 that can be merged

• O

1

B logM/B Ni B

• I/Os

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Conclusions

·· · · · · · · · · · · · · ·

• Funnel heap - a cache-oblivious priority queue
• Profile adaptive
• Requires tall cache assumption

(necessary requirement Brodal, Fagerberg 2002)

Open problem

• Worst-case bounds

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