Colors in R
STAT 133 Gaston Sanchez
Department of Statistics, UC–Berkeley gastonsanchez.com github.com/gastonstat/stat133 Course web: gastonsanchez.com/stat133
Colors in R STAT 133 Gaston Sanchez Department of Statistics, - - PowerPoint PPT Presentation
Colors in R STAT 133 Gaston Sanchez Department of Statistics, UCBerkeley gastonsanchez.com github.com/gastonstat/stat133 Course web: gastonsanchez.com/stat133 Colors in R 2 Colors in plots Colors on objects In R plots, many objects can
STAT 133 Gaston Sanchez
Department of Statistics, UC–Berkeley gastonsanchez.com github.com/gastonstat/stat133 Course web: gastonsanchez.com/stat133
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In R plots, many objects can take on different colors
◮ points ◮ lines ◮ axes (and tick marks) ◮ filling areas ◮ borders ◮ text ◮ legends ◮ background 3
x <- -4:4 y <- x^2 plot(x, y, pch = 19, cex = 3, col = rainbow(length(x)))
−2 2 4 5 10 15 x y
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# data Time <- 0:120 Period1 <- cos(2 * pi * Time/120) Period2 <- cos(2 * pi * Time/90) Period3 <- cos(2 * pi * Time/150) Periods <- data.frame( Period1 = Period1, Period2 = Period2, Period3 = Period3) # graphical parameters line_cols <- c("#5984d4", "#d45984", "#84d459") line_types <- c("solid", "dotted", "dashed") # plot matplot(Periods, type = "l", xlab = "Time", ylab = "Expression" , col = line_cols, lty = line_types, lwd = 3) legend("bottomleft", c("120 min period", " 90 min period","150 min period"), col = line_cols, lty = line_types) 5
20 40 60 80 100 120 −1.0 −0.5 0.0 0.5 1.0 Time Expression 120 min period 90 min period 150 min period
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◮ Color isn’t just about making your charts look pretty ◮ Color can serve as a visual cue just like the height of a bar
◮ R provides a straighforward way to modify colors 8
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There are various ways to specify colors in R
◮ by using the color’s name (in English): e.g. "turquoise" ◮ by using a hexadecimal string: "#FFAA00" ◮ by using standard color space functions: e.g. rgb() 10
The easiest way to specify a color in R is simply to use the color’s name. The R function colors() provides the names of 657 available colors
# first 30 colors colors()[1:30] ## [1] "white" "aliceblue" "antiquewhite" "antiquewhite1" ## [5] "antiquewhite2" "antiquewhite3" "antiquewhite4" "aquamarine" ## [9] "aquamarine1" "aquamarine2" "aquamarine3" "aquamarine4" ## [13] "azure" "azure1" "azure2" "azure3" ## [17] "azure4" "beige" "bisque" "bisque1" ## [21] "bisque2" "bisque3" "bisque4" "black" ## [25] "blanchedalmond" "blue" "blue1" "blue2" ## [29] "blue3" "blue4" 11
# first 10 colors() pie(rep(1, 10), col = colors()[1:10], labels = colors()[1:10])
white aliceblue antiquewhite antiquewhite1 antiquewhite2 antiquewhite3 antiquewhite4 aquamarine aquamarine1 aquamar
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Use grep() to get colors of a given name
# orangey colors colors()[grep("orange", colors())] ## [1] "darkorange" "darkorange1" "darkorange2" "darkorange3" "darkorange4" ## [6] "orange" "orange1" "orange2" "orange3" "orange4" ## [11] "orangered" "orangered1" "orangered2" "orangered3" "orangered4" 13
# orangey colors()
pie(rep(1, length(oranges)), col = oranges, labels = oranges)
darkorange darkorange1 darkorange2 darkorange3 darkorange4
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657 R built−in colors
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# Code by Earl F. Glynn SetTextContrastColor <- function(color) { ifelse( mean(col2rgb(color)) > 127, "black", "white") } TextContrastColor <- unlist(lapply(colors(), SetTextContrastColor)) colCount <- 25 # number per row rowCount <- 27
plot(c(1, colCount), c(0, rowCount), type = "n", axes=FALSE, ylab = "", xlab = "", ylim = c(rowCount, 0)) title("657 R built-in colors") for (j in 0:(rowCount-1)) { base <- j * colCount remaining <- length(colors()) - base RowSize <- ifelse(remaining < colCount, remaining, colCount) rect((1:RowSize)-0.5, j-0.5, (1:RowSize)+0.5, j+0.5, border = "black", col = colors()[base + (1:RowSize)]) text((1:RowSize), j, paste(base + (1:RowSize)), cex = 0.7, col = TextContrastColor[base + (1:RowSize)]) } par(op)
http://research.stowers-institute.org/efg/R/Color/Chart/index.htm 16
Note that there is a wide range of gray (grey) colors:
# gray and grey colors grays <- colors()[grep("gr[a|e]y", colors())] length(grays) ## [1] 224 head(grays, 10) ## [1] "darkgray" "darkgrey" "darkslategray" "darkslategray1" ## [5] "darkslategray2" "darkslategray3" "darkslategray4" "darkslategrey" ## [9] "dimgray" "dimgrey" 17
# color argument 'col' plot(mtcars$mpg, mtcars$hp, pch = 19, col = "blue", cex = 1.2)
15 20 25 30 50 150 250 mtcars$mpg mtcars$hp
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◮ Computers create the colors we see on a monitor by
combining 3 primary colors of light:
– red – green – blue
◮ This combination is known as RGB color model ◮ Each color light is also referred to as a channel 20
A computer screen displays a color by combining red light, green light and blue light, the so-called RGB model.
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◮ Any color you see on a monitor can be described by a
series of 3 numbers (in the following order):
– a red value – a green value – a blue value
◮ e.g. red=30, green=200, blue=180 22
◮ The amount of light in each color channel is typically
described on a scale from 0 (none) to 255 (full-blast)
◮ Alternatively, scales can be provided as percent values from
0 (none) to 1 (100%)
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Some reference colors: RGB Values Color (255, 0, 0) red (0, 255, 0) green (0, 0, 255) blue (0, 0, 0) black (255, 255, 255) white The closer the three values get to 255 (100%), the closer the resulting color gets to white
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R provides the function rgb() to specify RGB colors
# 0 to 1 (default scale) rgb(red = 1, green = 0, blue = 0) ## [1] "#FF0000" # 0 to 255 rgb(red = 255, green = 0, blue = 0, maxColorValue = 255) ## [1] "#FF0000"
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# color argument 'col' plot(mtcars$mpg, mtcars$hp, pch = 19, cex = 1.2, col = rgb(255, 0, 0, max = 255))
15 20 25 30 50 150 250 mtcars$mpg mtcars$hp
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Storing RGB colors in decimal notation would require 9 digits:
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Storing RGB colors in decimal notation would require 9 digits:
In order to have a more efficient storage system, computers use hexadecimal digits
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A color can also be specified as a string beginning with a hash symbol "#" and followed by six hexadecimal digits
◮ "#FF0000" (red) ◮ "#00FF00" (green) ◮ "#0000FF" (blue) ◮ "#FF6347" (tomato)
This is actually the output format of rgb()
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# color argument 'col' plot(mtcars$mpg, mtcars$hp, pch = 19, cex = 1.2, col = "#559944")
15 20 25 30 50 150 250 mtcars$mpg mtcars$hp
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Hexadecimal: numeral system with base 16, or hex
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
1 2 3 4 5 6 7 8 9 A B C D E F
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◮ The hexadecimal representation uses 16 different symbols ◮ The 16 symbols are all 10 digits (0-9) and 6 first letters
(A-F)
◮ The digits 0-9 represent values zero to nine ◮ The letters A, B, C, D, E, F (or a, b, c, d, e, f) represent
values ten to fifteen
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Decimal and Hexadecimal
## 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 ## decimal 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 ## hexadecimal 0 1 2 3 4 5 6 7 8 9 A B C D E F
Two hexadecimal digits together can make 16 × 16 = 256 different values (from 0 to 255) Six hexadecimal digits together can make 166 = 16, 777, 216 different values.
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◮ # declares that this “is a hex number” ◮ The other six are really three sets of pairs ◮ Each pair controls one primary additive color ◮ The first pair corresponds to red ◮ The second pair corresponds to green ◮ The last pair corresponds to blue 34
red green blue
There are 256 possible shades each of red, green, and blue
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1 2 3 4 5 6 7 8 9 A B C D E F d0 30 10 c0 d0 50
#d03010 #c0d050
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◮ 0 is the smallest representation of a color (absence of color) ◮ F is 15 times the intensity of color 0 ◮ 00 is equal to zero hue ◮ FF is equal to a pure color ◮ #000000 black ◮ #FFFFFF white ◮ equal digits produce a shade of gray 37
8x16 + 5x1 = 133 10x16 + 0x1 = 160 15x16 + 2x1 = 242 rgb(133, 160, 242, maxColorValue = 255)
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http://drmoron.org/is-black-a-color/ 39
A) #FFA500 B) #3EDCD9 C) #A500FF D) #E88472
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A) Orange B) Blue C) Black D) Yellow
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◮ The RGB color model is the most commonly used ◮ However, specifying RGB colors in not intuitive ◮ It is no straightforward how to make a color stronger,
darker or lighter with RGB values
◮ It is also hard to “read” RGB values (and being able to
identify the corresponding hue)
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◮ An alternative to RGB values is the HSV model ◮ HSV: Hue (color), Saturation, Value ◮ HSV rearranges the geometry of RGB following cyclindrical
coordinates
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◮ Hue values are measured in degrees around the circle
– Red at 0 degrees – Green at 120◦ – Blue at 240◦ – other colors in between
◮ Saturation is a percentage value from 0 (gray) to 1 (full
blast)
◮ Value is also a percentage value from 0 (darkest) to 1
(lightest)
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R provides the function hsv() which takes an HSV triplet
hsv(h = 1, s = 0.8, v = 0.9)
Note that the Hue value ranges from 0 (0 degrees) to 1 (360 degrees)
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# hsv color plot(mtcars$mpg, mtcars$hp, pch = 19, cex = 1.2, col = hsv(h = 1, s = 1, v = 1))
15 20 25 30 50 150 250 mtcars$mpg mtcars$hp
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◮ HSV is a more intuitive system ◮ HSV is also more perceptually relevant ◮ Once you select a hue, it is easy to make it stronger,
darker, or lighter
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◮ Another model is HCL ◮ HCL: Hue, Chroma, Luminance ◮ Hue values are measured in degrees around the circle
– Red at 0 degrees – Green at 120◦ – Blue at 240◦ – other colors in between
◮ Luminance is also a percentage value from 0 (darkest) to
100 (lightest)
◮ Chroma depends on Hue and Luminance 49
# hcl color plot(mtcars$mpg, mtcars$hp, pch = 19, cex = 1.2, col = hcl(h = 3550, c = 75, l = 50))
15 20 25 30 50 150 250 mtcars$mpg mtcars$hp
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R provides the functions hsv() and hcl()
◮ HSV (Hue, Saturation, Value) triplet:
hsv(h = 1, s = 0.8, v = 0.9)
◮ HCL (Hue, Chroma, Luminance) triplet:
hcl(h = 1, c = 35, l = 85)
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A color model is an abstract mathematical model describing the way colors can be represented as tuples of numbers, typically as three or four values or color components.
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The RGB model uses an additive color mixing with primary colors of red, green, and blue, each of which stimulates one of the three types of the eye’s color receptors.
Mixtures of light of these primary colors cover a large part of the human color space and thus produce a large part of human color experiences.
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All R colors are stored with an alpha transparency channel.
◮ An alpha value of 0 means fully transparent ◮ An alpha value of 1 means fully opaque 55
When using any of the color space functions, transparency is indicated with the parameter alpha:
◮ rgb(1, 0, 0, alpha = 0.5) ◮ hsv(h = 1, s = 0.8, v = 0.8, alpha = 0.5) ◮ hcl(h = 0, c = 35, l = 85, alpha = 0.5) 56
When using hexadecimal notation, transparency is indicated by using a hexadecimal string of eight digits. The last two digits indicate transparency:
◮ a hex digit "00" indicates an alpha value of 0 (fully
transparent)
◮ a hex digit "FF" indicates an alpha value of 1 (fully
For example, "#FFA50080" specifies a semitransparent orange. Note that "#FFA500" is equivalent to "#FFA500FF"
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red green blue
alpha
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◮ The number of lines or points on a graph can obscure
◮ One option to present many overlapping values is to make
the color values partially transparent
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# transparent color plot(iris$Petal.Length, iris$Sepal.Length, pch = 19, cex = 1.2, col = "#33994088")
1 2 3 4 5 6 7 4.5 5.5 6.5 7.5 iris$Petal.Length iris$Sepal.Length
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R provides a set of functions for converting between different color spaces function package col2rgb() "grDevices" hex2RGB() "colorspace" convertColor() "grDevices"
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# turquoise into RGB col2rgb("turquoise") ## [,1] ## red 64 ## green 224 ## blue 208 # turquoise (hex) into RGB library("colorspace") hex2RGB("#40E0D0") ## R G B ## [1,] 0.2509804 0.8784314 0.8156863 # color 'red' sRGB into Luv convertColor(t(col2rgb("red")/255), from = "sRGB", to = "Luv") ## L u v ## [1,] 53.48418 175.3647 37.80017 62
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Usually more than one color is required within a single plot, and in such cases we need to select colors that are aesthetically pleasing or related in some way. For this, R provides several ways to specifcy or create color schemes and palettes.
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R provides a set of functions to generate basic color sets.
◮ rainbow() ◮ heat.colors() ◮ topo.colors() ◮ terrain.colors() ◮ cm.colors() ◮ gray.colors() 65
# 8 colors rainbow n <- 8 pie(rep(1, n), col = rainbow(n))
1 2 3 4 5 6 7 8
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# heat colors (8 values) n <- 8 pie(rep(1, n), col = heat.colors(n))
1 2 3 4 5 6 7 8
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# terrain colors (8 values) n <- 8 pie(rep(1, n), col = terrain.colors(n))
1 2 3 4 5 6 7 8
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# topo colors (8 values) n <- 8 pie(rep(1, n), col = topo.colors(n))
1 2 3 4 5 6 7 8
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# cyan-magenta colors (8 values) n <- 8 pie(rep(1, n), col = cm.colors(n))
1 2 3 4 5 6 7 8
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# gray colors (8 values) n <- 8 pie(rep(1, n), col = gray.colors(n))
1 2 3 4 5 6 7 8
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The R package "RColorBrewer" (by Erich Neuwirth) provides nice color schemes designed by Cynthia Brewer and described at http://colorbrewer2.org
# remember to install RColorBrewer first! library(RColorBrewer) # display available schemes display.brewer.all()
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BrBG PiYG PRGn PuOr RdBu RdGy RdYlBu RdYlGn Spectral Accent Dark2 Paired Pastel1 Pastel2 Set1 Set2 Set3 Blues BuGn BuPu GnBu Greens Greys Oranges OrRd PuBu PuBuGn PuRd Purples RdPu Reds YlGn YlGnBu YlOrBr YlOrRd
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The main function of "RColorBrewer" is brewer.pal() that allows you to select a color palette by specifying the name and size of the palette.
# palette "BuPu" (blue-purple) n <- 7 pie(rep(1, n), col = brewer.pal(n, "BuPu"))
1 2 3 4 5 6 7
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# palette "Spectral" n <- 11 pie(rep(1, n), col = brewer.pal(n, "Spectral"))
1 2 3 4 5 6 7 8 9 10 11
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◮ The package "colorspace" provides functions to create
colors in a variety of color spaces, plus functions to convert between color spaces.
◮ Another useful package is "munsell", which is designed
◮ There is also the "dichromat" package that provides a
series of palettes that are suitable for people with color blindness deficiencies.
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The color wheel helps you visualize the relationships that colors have to one another. The wheel shows different colors evenly apart.
#FF6347 #FFBF47 #E3FF47 #87FF47 #47FF63 #47FFBF #47E3FF #4787FF #6347FF #BF47FF #FF47E3 #FF4787
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The R package "colortools" provides the function wheel(). The function takes the name of a color, and produces a corresponding color wheel with the specified number of slices.
# remember to install colortools first! library(colortools) # color wheel for 'tomato' wheel("#FFB973", bg = "white")
#FFB973 #FFFF73 #B9FF73 #73FF73 #73FFB9 #73FFFF #73B9FF #7373FF #B973FF #FF73FF #FF73B9 #FF7373
## [1] "#FFB973" "#FFFF73" "#B9FF73" "#73FF73" "#73FFB9" "#73FFFF" "#73B9FF" ## [8] "#7373FF" "#B973FF" "#FF73FF" "#FF73B9" "#FF7373"
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# Adjacent (analogous) adjacent("tomato", title = FALSE)
#FF6347 #FFBF47 #E3FF470D #87FF470D #47FF630D #47FFBF0D #47E3FF0D #4787FF0D #6347FF0D #BF47FF0D #FF47E30D #FF4787
# Complementary complementary("tomato", title = FALSE)
#FF6347 #FFBF470D #E3FF470D #87FF470D #47FF630D #47FFBF0D #47E3FF #4787FF0D #6347FF0D #BF47FF0D #FF47E30D #FF47870D
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# split complementary splitComp("tomato", title = FALSE)
#FF6347 #FFBF470D #E3FF470D #87FF470D #47FF630D #47FFBF #47E3FF0D #4787FF #6347FF0D #BF47FF0D #FF47E30D #FF47870D
# triadic triadic("tomato", title = FALSE)
#FF6347 #FFBF470D #E3FF470D #87FF470D #47FF63 #47FFBF0D #47E3FF0D #4787FF0D #6347FF #BF47FF0D #FF47E30D #FF47870D
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# tetradic tetradic("tomato", title = FALSE)
#FF6347 #FFBF470D #E3FF47 #87FF470D #47FF630D #47FFBF0D #47E3FF #4787FF0D #6347FF #BF47FF0D #FF47E30D #FF47870D
# square square("tomato", title = FALSE)
#FF6347 #FFBF470D #E3FF470D #87FF47 #47FF630D #47FFBF0D #47E3FF #4787FF0D #6347FF0D #BF47FF #FF47E30D #FF47870D
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R also offers the functions colorRamp() and colorRampPalette(). They are not color set generators, but color set function generators.
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colorRamp() produces a function for creating colors based on a sequence of values in the range 0 to 1. The output is a numeric matrix of RGB color values
red_green <- colorRamp(c("red", "green")) red_green( (0:4)/4 ) ## [,1] [,2] [,3] ## [1,] 255.00 0.00 ## [2,] 191.25 63.75 ## [3,] 127.50 127.50 ## [4,] 63.75 191.25 ## [5,] 0.00 255.00
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colorRampPalette() produces a function that generates n colors
## [1] "#FFA500" "#BF7B3F" "#7F527F" "#3F29BF" "#0000FF"
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The final appearance of a color can vary considerably depending
displayed through a projector.
The colors that R sends to a graphics device are sRGB colors; the reason is that most computer monitors are set up to work with sRGB model.
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◮ Color-Hex
http://www.color-hex.com/
◮ Paletton
http://paletton.com
◮ Adobe color scheme
https://color.adobe.com/create/color-wheel/
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