An Integrated Botanical Data Infrastructure in and for Pakistan - - PowerPoint PPT Presentation

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An Integrated Botanical Data Infrastructure in and for Pakistan - - PowerPoint PPT Presentation

An Integrated Botanical Data Infrastructure in and for Pakistan Mary E. Barkworth, GBIF Biodiversity Data Ambassador Utah State University, U.S.A. Infrastructure Civil infrastructure: Roads, bridges, laws, schools, water, electricity, sewage


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An Integrated Botanical Data Infrastructure in and for Pakistan

Mary E. Barkworth, GBIF Biodiversity Data Ambassador Utah State University, U.S.A.

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Infrastructure

Civil infrastructure:

Roads, bridges, laws, schools, water, electricity, sewage systems, internet, …..

Botanical Infrastructure

Herbaria, floras, nomenclatural code, microscopes, computers, cameras, …

PEOPLE, knowledgeable and interested individuals

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SLIDE 3

PAST TECHNOLOGICAL REVOLUTIONS

1500s Luca Ghini Herbarium specimens 1440+ Gutenberg Mass production of books 1750s Linnaeus Identification tools

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Digital Technology

Engage more people

ENORMOUS quantities of data New cross-disciplinary connections

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Global Biodiversity Information Facility The World’s Promoter of Data Sharing

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SLIDE 6

It starts in the field

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SLIDE 7

Royal Botanic Gardens, Kew https://slideplayer.com/slide/10723588/

Primarily for research – value dependent on quality of data and specimen preservation For education, relaxation, and research – value dependent on ability to attract, educate, and inspire

Botanical Garden of National Herbarium (part of PARC)

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  • Fresh research

material

  • Educate

Gardens

Few specimens – but living

Herbaria

Many specimens – but dead

  • Engage

public

  • More diversity
  • Unchanging

Generalize

  • bservations
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SLIDE 9

Specimens

  • Initially
  • Research
  • Educate
  • Develop descriptions
  • Check identification
  • Prepare lists
  • Today
  • Effects of weather and climate
  • Invasiveness
  • Medicinal properties
  • Assessments of invasiveness
  • Quantitative assessment of species

and phylogenetic diversity

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SLIDE 10

Add – data mobilization

GBIF: 116,040 records for Pakistan Most from Himalayan Upland Plant Database Quaid-i-Azam #3 contributor with 12,084

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Need – high quality data

Old

  • Locality – nearest town
  • Coordinates – latlon or absent
  • Scientific name
  • Habitat, associated species,

elevation, reproductive condition brief or absent.

New

  • Where in town
  • Georeference – latlon, datum,

uncertainty, remarks

  • Scientific name and ID reference
  • Habitat, associated species,

elevation, reproductive condition – most present with detail.

Education about fieldwork is key

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It starts in the field

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Post keys & link to taxon pages Taxon pages

Other benefits

Better field notes More collaborations Vouchered checklists Localized keys Data density dependent Specimen heat maps [Taxon & clade heat maps] [Phenology predictor]

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Data Mobilization November 2018

Current status

  • Herbarium records: 14027
  • With coordinates: 149
  • Flora of Pakistan online:
  • Keys – 197, a few updated
  • Specimen citations: 32,187
  • Descriptions: Unknown
  • Images: Unknown
  • SPINDLE: in development

Planned, November-December

  • Start georeferencing ISL, SWAT, RAW
  • Start data capture
  • University of Peshawar YES!
  • University of Sindh, Jamshoro
  • ?University of Malakand
  • Discussions with University of Karachi
  • Register ICFP & initiate data capture
  • Beta release of SPINDLE
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SPINDLE – Sylvia Kinosian, Will Pearse

  • Specimen Information Data Label Export
  • Offline tool
  • Capture data, generate label, generate csv file for upload to Symbiota
  • Version 1 for plants
  • Good for new and old collections
  • http://spindle-herbarium.com/
  • Beta release late this year
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SLIDE 16

Become a doer!

  • OpenHerbarium
  • KeyBase
  • Become a doer
  • Data capture (At least 10 records)
  • Checklist creator (At least 25 species)
  • Image provider (At least 5)
  • Collector (5 high quality specimens)
  • Choose one species
  • Download data from GBIF for world
  • Which institutions provide most records for

Pakistan? Georeferenced records?

NEW CHALLENGE! Build multi-access identification key

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SLIDE 17

mary.barkworth@usu.edu