The Americas 1 1 Major Questions before Ancient Genomes 1. - - PowerPoint PPT Presentation

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The Americas 1 1 Major Questions before Ancient Genomes 1. - - PowerPoint PPT Presentation

The Americas 1 1 Major Questions before Ancient Genomes 1. When did humans arrive in the Americas? 2. By what route did they get come? 2 2 Beringia Wikipedia 3 3 Ancient PaleoSiberians and Ancient Beringians Trail Creek


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The Americas

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Major Questions before Ancient Genomes

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  • 1. When did humans arrive in the Americas?
  • 2. By what route did they get come?

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Beringia

Wikipedia

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Ancient PaleoSiberians and Ancient Beringians

Figure 1A from Sikora et al. - 2018 - The population z .pdf

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Trail Creek Cave

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Two Routes to the South

Figure 1a from Rasmussen et al. - 2014 - The genome of a Late Pleistocene human from a Clov .pdf

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Anzick

16,000 cal BP 14,000 cal BP 13,000 cal BP Extent of glaciation

a

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Google Maps

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Big Bar Lake, Canada, 5,600 Years Ago

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Divergence between Northern and Southern

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Northern Native Americans

Wikipedia

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Na-Dené Language Distribution Algonquinian Language Distribution

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Earliest American Genome

Google Maps

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Anzick 12.6 kya Clovis13.0 kya

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The Clovis Culture

Wikipedia

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Earliest Native American Genomes

Google Maps

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Anzick 12.6 kya Spirit Cave 10.7 kya Kennewick 9.0 kya Clovis 13.0 kya Paisley 12.8 kya

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The Explosion

Google Earth

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Two Studies of Ancient American Genomes

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Published on the same day (November 8):

  • Reich’s group, in Cell: “Reconstructing the

Deep Population History of Central and South America”, Posth et al. - 2018 - Reconstructing the Deep Population History of Cent.pdf

  • Willerslev’s group, in Science: “Early human

dispersals within the Americas”, Moreno-Mayar et al. - 2018 - Early human dispersals within the Americas.pdf

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Anzick-Related Ancestry in South America

Posth et al. - 2018 - Reconstructing the Deep Population History of Cent (Fig 1A) .pdf

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Anzick-Related Ancestry in South America

Moreno-Mayar et al. - 2018 - Early human dispersals within the Americas (fig 1A) .pdf

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Subsequent Dilution and Admixture

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Dilution of Anzick-related ancestry in South America

  • Source unknown
  • Timing unknown

Some later admixture can be identified

  • Channel-Islands-related
  • Mixe-related

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Before 4,200 Years Ago

Posth et al. - 2018 - Reconstructing the Deep Population History of Cent (Fig 1A) .pdf

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After 5,000 Years Ago

Moreno-Mayar et al. - 2018 - Early human dispersals within the Americas (fig 1A) .pdf

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After 5,000 Years Ago

Based on Figure 1A from Sikora et al. - 2018 - The population z .pdf

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Saqqaq

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Na-Dené (Athabascan) Languages

Based on Flegontov et al. - 2017 - Paleo-Eskimo genetic legacy (Fig 6a) .pdf

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Northern Native Americans

Wikipedia

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Na-Dené Language Distribution Algonquinian Language Distribution

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Possible Neo-Eskimo Origin 3,100-2,500 BP

Based on Flegontov et al. - 2017 - Paleo-Eskimo genetic legacy (Fig 6b) .pdf

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Northern Native American Proto Paleo- Eskimo Neo- Eskimo

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Old Bering Sea Culture after 2,200 BP

Based on Flegontov et al. - 2017 - Paleo-Eskimo genetic legacy (Fig 6b) .pdf

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Neo- Eskimo Proto-Aleut Old Bering Sea Culture

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Thule Culture about 1,150 Years Ago

Based on Flegontov et al. - 2017 - Paleo-Eskimo genetic legacy (Fig 6b) .pdf

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Principal Components Analysis

Flegontov et al. - 2017 - Paleo-Eskimo genetic legacy (Fig 2) .pdf

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Figure 2. Principal component analysis (PCA) on the HumanOrigins datasets prior to any

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  • utlier removal. A plot of two principal components (PC1 vs. PC2) is presented. Calibrated

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radiocarbon dates in calBP are shown for ancient samples (large circles). For individuals,

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95% confidence intervals are shown, and for populations, minimal and maximal dates

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among all confidence intervals of that population are shown. A similar plot for the Illumina

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dataset is displayed in Extended Data Fig. 3, and plots for the datasets used for

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qpWave/qpAdm analyses are shown in Supplementary Information section 4. In those

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datasets, First American, Chukotko-Kamchatkan-speaking and Eskimo-Aleut-speaking

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individuals having >1% European, African, or Southeast Asian ancestry according to

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ADMIXTURE were removed.

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Europeans SE Asians East Siberians West Siberians Southern Native Americans Northern Native Americans Paleo-Eskimos Ancient Neo-Eskimos Ancient Aleuts Ancient

  • N. Athabaskans
  • N. Athabaskans

Chukotko-Kamchatkans Eskimo- Aleuts

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Simplified Partial Demography of the Americas

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NNA South America SNA AB Pal Sib East Asia ANE Kennewick SW Ontario ??? Anzick Early SAm Later SAm Mixe Early CAm Unknown Population A Paleo- Eskimo Athabascan (Na-Dené) Proto Paleo- Eskimo Neo-Eskimo Algonquin

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Paleoamericans Hypothesis

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  • Distinctive skull shape of some ancient

and current Native Americans

  • Similar to skull shape of some

indigenous Asian populations

  • Archaeological and anthropological

research, not genomics

  • Mainly from a single research group

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The “Population Y” Hypothesis

Skoglund et al. - 2015 - Genetic evidence for two founding populations of t (Fig 1d) .pdf

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Onge Australians Papuans Mamanwa Ami Tongan 0.003 −0.001 Suruí Karitiana Xavante Cabecar

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Current Status

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Paleoamerican hypothesis

  • No correlation with genomics
  • Any real difference has environmental causes

Population Y hypothesis

  • Both labs confirmed faint signal
  • Willerslev doubled down
  • Reich raised possibility of a false positive

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