MutSig http://www.broadinstitute.org/cancer/cga/mutsig Covered - - PowerPoint PPT Presentation

mutsig http broadinstitute org cancer cga mutsig
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MutSig http://www.broadinstitute.org/cancer/cga/mutsig Covered - - PowerPoint PPT Presentation

MutSig http://www.broadinstitute.org/cancer/cga/mutsig Covered Bases/Total Possible Mutations for that Gene & Category Score # Observed Background for that mutations in Mutation Rate gene Sum over each that gene & mutation


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MutSig

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http://www.broadinstitute.org/cancer/cga/mutsig

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Score for that gene Sum over each mutation category Background Mutation Rate # Observed mutations in that gene & category Covered Bases/Total Possible Mutations for that Gene & Category

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+

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Covariate 1 (Z Score) Covariate 2 (Z Score)

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Lawrence et al. Nature, Jan 2014.

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Do you agree with their chosen inputs? Could a simpler method get the same result? Are there any improvements that could be made?