HMS Parallel Image Analysis Strategy using OMERO To enable analysis - - PowerPoint PPT Presentation

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The Plan Landscape Challenges Acknowledgements HMS Parallel Image Analysis Strategy using OMERO To enable analysis of large quantities of image data and associated metadata by making use of existing compute and storage resources in

SLIDE 1

The Plan Landscape Challenges Acknowledgements

HMS Parallel Image Analysis Strategy using OMERO

To enable analysis of large quantities of image data and associated metadata by making use of existing compute and storage resources in conjunction with a new OMERO resource. Douglas Russell

Harvard Medical School

June 2, 2015

Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

SLIDE 2

The Plan Landscape Challenges Acknowledgements

Image Management, Analysis & Publishing

Roll-out OMERO campus wide Define new workflow for image management Define new workflow for image analysis Enable large scale parallel analysis especially for High Content Screens Enable collaborative sharing Enable data publication

Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

SLIDE 3

The Plan Landscape Challenges Acknowledgements

HMS Landscape

OMERO Orchestra Cluster Distributed Parallel Filesystem OMERO Database Design Analysis Attach Results Acquire Data Import Data To OMERO (In-Place) Read Metadata Read Image Data Run Analysis Users Image & Data Analysis Core Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

SLIDE 4

The Plan Landscape Challenges Acknowledgements

Filesystems

OMERO EMC ISILON Distributed Parallel Filesystem OMERO Managed Respository

NFS

OMERO User Home Directories User Home Directories

User runs in-place import Symlinks

Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

SLIDE 5

The Plan Landscape Challenges Acknowledgements

(Tiny Subset of) Challenges

Authorization & Permissions Generalising Solution Publishing Federation Useability

Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

SLIDE 6

The Plan Landscape Challenges Acknowledgements

Acknowledgements

Sorger Lab Laboratory of Systems Pharmacology HMS Research Computing NIH LINCS HMS Image Data & Analysis Core Notice of Conflict of Interest: Peter Sorger (HMS LINCS PI) is a co-founder of Glencoe Software Inc. that is developing OMERO software and selling OMERO support services.

Douglas Russell HMS Parallel Image Analysis Strategy using OMERO