HMS Parallel Image Analysis Strategy using OMERO To enable analysis - PowerPoint PPT Presentation

The Plan Landscape Challenges Acknowledgements HMS Parallel Image Analysis Strategy using OMERO To enable analysis of large quantities of image data and associated metadata by making use of existing compute and storage resources in conjunction with a new OMERO resource. Douglas Russell Harvard Medical School June 2, 2015 Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

The Plan Landscape Challenges Acknowledgements Image Management, Analysis & Publishing Roll-out OMERO campus wide Define new workflow for image management Define new workflow for image analysis Enable large scale parallel analysis especially for High Content Screens Enable collaborative sharing Enable data publication Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

The Plan Landscape Challenges Acknowledgements HMS Landscape Acquire Data Image & Data Analysis Core Design Analysis Run Analysis Users Import Data To OMERO (In-Place) OMERO Distributed Parallel Filesystem Orchestra Cluster Read Image Data OMERO Database Read Metadata Attach Results Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

The Plan Landscape Challenges Acknowledgements Filesystems EMC ISILON Distributed Parallel Filesystem OMERO Managed User Home Directories Respository OMERO User Symlinks Home Directories User runs in-place import NFS OMERO Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

The Plan Landscape Challenges Acknowledgements (Tiny Subset of) Challenges Authorization & Permissions Generalising Solution Publishing Federation Useability Douglas Russell HMS Parallel Image Analysis Strategy using OMERO

The Plan Landscape Challenges Acknowledgements Acknowledgements Sorger Lab Laboratory of Systems Pharmacology HMS Research Computing NIH LINCS HMS Image Data & Analysis Core Notice of Conflict of Interest: Peter Sorger (HMS LINCS PI) is a co-founder of Glencoe Software Inc. that is developing OMERO software and selling OMERO support services. Douglas Russell HMS Parallel Image Analysis Strategy using OMERO