Current status Jens Lagergren THE CORE VIEW PERSPECTIVE - - PowerPoint PPT Presentation

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Nov 17, 2022 35 likes •135 views

KTH Royal Institute of Technology Current status Jens Lagergren THE CORE VIEW PERSPECTIVE Computational Cancer Biology: An Evolutionary Perspective Niko Beerenwinkel 1,2 * , Chris D. Greenman 3 * , Jens Lagergren 4 * Differentiation

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KTH

Current status

Jens Lagergren

Royal Institute of Technology

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THE CORE VIEW

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Differentiation

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Space

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Time

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Phenotype etcetera

PERSPECTIVE

Computational Cancer Biology: An Evolutionary Perspective

Niko Beerenwinkel1,2*, Chris D. Greenman3*, Jens Lagergren4*

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APPLICANTS

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Jens Lagergren, KTH

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Lukas Käll, KTH

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Johan Hartman, KS

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Jonas Frisén, KI

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RECRUITMENT

2/7/2016 Academic Records http://registration.boun.edu.tr/scripts/stuinfar.asp 1/1

Academic Records

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To jump to commitee records follow this link > Commitee Rec. Photo Name: HAZAL KOPTAGEL Student#: 2014700096 GPA: 3,94 Semester: 4 English Test / Result: ELTS / P Faculty: INST.FOR GRADUATE STUDIES IN SCIENCE&ENGINEERING Department: COMPUTER ENGINEERING Status / Term Status: MASTER / NORMAL High School: SİVAS FEN LİSESİ EMail: koptagelhazal@gmail.com Advisor(s): ALİ TAYLAN CEMGİL (taylan.cemgil@boun.edu.tr) The student is registered for the semester 2015/20161.

Term Information

Semester : 2015/20161 GPA : 3,94 Overall Attempted : 25 +0 Overall Completed : 25 +0 Overall Points : 98,5 Status : SPA : 4

Sem. Attempted : 6 +0
Sem. Completed : 6 +0
Sem. Points : 24

CMPE540 .01 PRINCIPLES OF ARTIFICIAL INTELLIGENCE AA 3 CMPE585 .01 SP.TP.WEARABLE COMPUTING AA 3 CMPE690 .07 M.S.THESIS TP

Semester : 2014/20152 GPA : 3,92 Overall Attempted : 19 +0 Overall Completed : 19 +0 Overall Points : 74,5 Status : SPA : 3,83

Sem. Attempted : 9 +0
Sem. Completed : 9 +0
Sem. Points : 34,5

CMPE545 .01 ARTIFICIAL NEURAL NETWORKS BA 3 CMPE548 .01 MONTE CARLO METHODS AA 3 CMPE58P .01 SP.TOP.IN CMPE:MACHINE LISTENING AA 3

Semester : 2014/20151 GPA : 4 Overall Attempted : 10 +0 Overall Completed : 10 +0 Overall Points : 40 Status : SPA : 4

Sem. Attempted : 10 +0 Sem. Completed : 10 +0
Sem. Points : 40

CMPE544 .01 PATTERN RECOGNITION AA 3 CMPE547 .01 BAYESIAN STATISTICS&MACHINE LEARNING AA 3 CMPE579 .01 GRADUATE SEMINAR P CMPE599 .05 GUIDED RESEARCH IN MSI AA 4 Commitee Records

Semester Type Detail 2014/20151 GRPHD KABULÜ 10.06.2014/12 YKK İLE COE MASTER KABULÜ.

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Hazal Koptagel Olivier Bilenne Gustavo Jeuken PhDs Postdocs Sept. Ayan Chaudhury Jan. Jonas Maaskola

12/07/2017 KTH | Jonas Maaskola https://www.kth.se/profile/maaskola 1/2

KTH Profiler Profiles in English KTH / Profiler / Jonas Maaskola

Jonas Maaskola

RESEARCHER

Kungliga Tekniska Högskolan https://www.kth.se/profile/maaskola

Detaljer

Arbetar vid DIVISION OF GENE TECHNOLOGY Adress Tomtebodavägen 23A, Solna E-post jonas.maaskola@scilifelab.se Arbetar på Science for Life Laboratory

Publikationer

Publikationslista

Seong-Hwan Jun Oct.

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HAZAL KOPTAGEL

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Cell lineage trees

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Proper model

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Use (early) SNVs for detecting allelic drop-out

2/7/2016 Academic Records http://registration.boun.edu.tr/scripts/stuinfar.asp 1/1

Academic Records

Close Print To jump to commitee records follow this link > Commitee Rec. Photo Name: HAZAL KOPTAGEL Student#: 2014700096 GPA: 3,94 Semester: 4 English Test / Result: ELTS / P Faculty: INST.FOR GRADUATE STUDIES IN SCIENCE&ENGINEERING Department: COMPUTER ENGINEERING Status / Term Status: MASTER / NORMAL High School: SİVAS FEN LİSESİ EMail: koptagelhazal@gmail.com Advisor(s): ALİ TAYLAN CEMGİL (taylan.cemgil@boun.edu.tr) The student is registered for the semester 2015/20161. Term Information Semester : 2015/20161 GPA : 3,94 Overall Attempted : 25 +0 Overall Completed : 25 +0 Overall Points : 98,5 Status : SPA : 4

Sem. Attempted : 6 +0
Sem. Completed : 6 +0
Sem. Points : 24

CMPE540 .01 PRINCIPLES OF ARTIFICIAL INTELLIGENCE AA 3 CMPE585 .01 SP.TP.WEARABLE COMPUTING AA 3 CMPE690 .07 M.S.THESIS TP Semester : 2014/20152 GPA : 3,92 Overall Attempted : 19 +0 Overall Completed : 19 +0 Overall Points : 74,5 Status : SPA : 3,83

Sem. Attempted : 9 +0
Sem. Completed : 9 +0
Sem. Points : 34,5

CMPE545 .01 ARTIFICIAL NEURAL NETWORKS BA 3 CMPE548 .01 MONTE CARLO METHODS AA 3 CMPE58P .01 SP.TOP.IN CMPE:MACHINE LISTENING AA 3 Semester : 2014/20151 GPA : 4 Overall Attempted : 10 +0 Overall Completed : 10 +0 Overall Points : 40 Status : SPA : 4

Sem. Attempted : 10 +0 Sem. Completed : 10 +0
Sem. Points : 40

CMPE544 .01 PATTERN RECOGNITION AA 3 CMPE547 .01 BAYESIAN STATISTICS&MACHINE LEARNING AA 3 CMPE579 .01 GRADUATE SEMINAR P CMPE599 .05 GUIDED RESEARCH IN MSI AA 4 Commitee Records Semester Type Detail 2014/20151 GRPHD KABULÜ 10.06.2014/12 YKK İLE COE MASTER KABULÜ. Close Print

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JONAS MAASKOLA

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Spatial Transcriptomics not yet single-cell resolution

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Deconvolute and differentiate between cell types

µgts σs xgts xgs θts φgt γgt ρgt rt pt c d e f c′ d′ e′ f ′ a b Gene g Cell type t Spot s

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OLIVIER BILENNE

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Pathway-based path model for Cancer Progression

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Extend - tree, single-cell, frequencies

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EU ITN - CONTRA

Consortium Member Country Dept./ Division / Scientist-in-Charge #PhDs Beneficiaries Royal Institute of Technology Sweden CST, CSC Jens Lagergren 2 University of Cambridge United Kingdom Cancer Research UK Cambridge institute Florian Markowetz 2 University of Warsaw Poland The Faculty of Mathematics, Informatics and Mechanics, Institute of Informatics Ewa Szczurek 2 ETH Zurich Switzerland

Dept. of Biosystems Science and

Engineering Niko Beerenwinkel 2 University of Vigo Spain

Dept. Biochemistry, Genetics and

Immunology David Posada 2 King’s College London United Kingdom Cancer Studies Francesca Ciccarelli 2 Institute for Research in Biomedicine Spain Biomedical Genomics Group, Structural and Bioinformatics and Cancer Programs Nuria Lopez-Bigas 2 The Institute of Cancer Research United Kingdom Molecular Pathology, Centre for Evolution and Cancer Yinyin Yuan 1 Partner Organisations Ardigen SA Poland Stefan Loska Merck KGaA Germany Eike Staub SBG UK

Dr. Julia F. Li

Spatial Transcriptomics AB Sweden Biotech Florian Baumgartner Galician Research and Development Centre in Advanced Telecommunications Spain eHealth Helena Fernández British Columbia Cancer Agency Branch Canada D e p a r t m e n t o f M o l e c u l a r Oncology

Dr. Sohrab Shah

Torus Software Solutions SL Spain HPC and Big Data Guillermo López

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TRAINING EVENTS

Main Training Events & Conferences ECTS (if any) Lead Institution Action Month (estimated) 1 1st workshop: “kick-off and background” 2 KTH 7 2 1st summer school: “Handling single cell data” 5 UNIWARSAW 10 3 2nd summer school: “Cancer biology and treatment” 5 UCAM 21 4 3rd summer school: “Promoting your career” 5 Gradiant 33 5 2nd workshop: “Software development” 5 Ardigen 13 6 3rd workshop: “Models of evolution” 3 IRP 18 7 4th workshop: “Spatial models of tumours” 3 ICR 29 8 International conference 2 ETH 36

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