Comprehensive Modelling Platform David anek, Jan Safr Cerven - - PowerPoint PPT Presentation

Comprehensive Modelling Platform

David ˇ Safr´ anek, Jan ˇ Cerven´ y, Matej Troj´ ak, Matej Hajnal, Marek Havl´ ık, Radoslav Doktor, Ondrej Loˇ sˇ t´ ak Lukr´ ecia Mertov´ a

April 9, 2019

Systems Biology Laboratory, Masaryk University, Brno, Czech Republic

Cyanobacteria

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E-cyanobacterium.org Web-based Platform for Systems Biology of Cyanobacteria

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E-cyanobacterium.org Web-based Platform for Systems Biology of Cyanobacteria

• Online platform for cyanobacteria processes
• Store, maintain, and present experimental data
• Share, analyse, re-use, and compare models
• Unified standards

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Comprehensive Modelling Platform

Universal web-based framework whose idea is to stimulate collaboration between experimental and computational systems biologists.

• Integrate biological knowledge with computational models and

wet-lab experiments

• Public sharing
• Annotation
• Visualization
• Simulation of processes
• Model analysis

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Comprehensive Modelling Platform – Architecture

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Biochemical Space

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Comprehensive Modelling Platform

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Comprehensive Modelling Platform – Summary

• all features under one web
• modular architecture
• data integration
• formal methods
• standard formats (SBML, SED-ML, . . . )

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