Welcome!! Welcome from Utah/Boston Introduction CIBC Introduction - - PDF document

Introduction

Welcome!!

Introduction

Welcome from Utah/Boston

Introduction

CIBC

Center for Integrative Biomedical Computation

Goals

• Produce cutting edge software for

biomedical researchers and clinicians

• Develop new techniques and algorithms

in image processing, geometric modeling, simulation and visualization

• Carry out original research in

segmentation, bioelectric field simulation, and visualization

Introduction

CIBC

Center for Integrative Biomedical Computation

Introduction

History of the CIBC

NIH/NCRR CIBC Renewal for 5 Years 2010

Introduction

Center Goal

To achieve scientific breakthroughs through the use of computational technology

J.T. Johnson III, M.S. Hansen, I. Wu, L.J. Healy, C.R. Johnson, G.M. Jones, M.R. Capecchi, C. Keller. PLoS Genetics, Vol. 2, No. 1, pp. 471--477, 2006.

Mario Capecchi and Charles Keller

Introduction

Center Vision

Image Processing Image & Data Acquisition Visualization Modeling, Simulation & Validation Lab/Clinic Geometry Processing

Integrated Software Tools

Introduction

Center Organization

Introduction

Collaborations

Essential to a P41

• Ensure relevance
• Provide motivation, guidance and

feedback

• Metric for success (and renewal)

Challenge a P41

• Cannot receive funding
• Must remain motivated
• Must amplify impact of the Center

Introduction

Workflow = Pipeline

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:'.%5")3$(2"11'#5)%#/)1"5."#&%&'(#< E'&&'#5)(*)5"(."&$'2)1-$*%2"1 :5"(."&$'2).(/",'#5< Meshless approaches Surface based approaches

Seg3D BioMesh3D SCIRun ImageVis3D + map3d

Introduction

Center Software Infrastructure

SCIRun (Prototype testing) Seg3D (segmentation) BioMesh3D (Meshing) Command line tools Matlab/Python ImageVis3D (Visualization)

Flexible, Extensible Environment

Open Source Software (MIT Public License) Problem Solving Environment (BioPSE) PowerApps (Seg3D, ImageVis3D, BioMesh3D, Shapeworks) Linux, Mac OSX, Windows

SCIRun Infrastructure Core Layer Algorithm Layer Control Layer map3D (Visualization)

Introduction

Biomedical Research Impact

Introduction

Clinical Impact

Atrial Fibrillation

Introduction

Clinical Impact

Simulation of Defibrillation

Introduction

Clinical Impact

Deep Brain Stimulation

Introduction

Clinical Impact

Cardiac Arrhythmias & Ischemia

Introduction

Key Center Personnel

PI’s

• Chris Johnson
• Rob MacLeod
• Ross Whitaker
• Dana Brooks

Technical Management

• Liz Jurrus

Administrative Team

• Deb Zemek
• Greg Jones
• Corinne Garcia

Introduction

Workshop People

Dafang Wang Jess Tate Brett Burton Darrell Swenson Ayla Kahn Tom Fogal Burek Erem Burek Josh Levine Liz Jurrus Dana Brooks Rob MacLeod

Introduction

Schedule