Welcome!! Welcome from Utah/Boston Introduction CIBC Introduction - PDF document

Introduction Welcome!! Welcome from Utah/Boston Introduction

CIBC Introduction Center for Integrative Biomedical Computation Goals • Produce cutting edge software for biomedical researchers and clinicians • Develop new techniques and algorithms in image processing, geometric modeling, simulation and visualization • Carry out original research in segmentation, bioelectric field simulation, and visualization CIBC Introduction Center for Integrative Biomedical Computation

History of the CIBC Introduction NIH/NCRR CIBC Renewal for 5 Years 2010 Center Goal Introduction To achieve scientific breakthroughs through the use of computational technology Mario Capecchi and Charles Keller J.T. Johnson III, M.S. Hansen, I. Wu, L.J. Healy, C.R. Johnson, G.M. Jones, M.R. Capecchi, C. Keller. PLoS Genetics, Vol. 2, No. 1, pp. 471--477, 2006.

Center Vision Introduction Image Processing Image & Data Acquisition Integrated Software Tools Lab/Clinic Geometry Processing Modeling, Simulation & Validation Visualization Center Organization Introduction

Collaborations Introduction Essential to a P41 • Ensure relevance • Provide motivation, guidance and feedback • Metric for success (and renewal) Challenge a P41 • Cannot receive funding • Must remain motivated • Must amplify impact of the Center Workflow = Pipeline Introduction C.%5")%D-'1'&'(#)A)3$(2"11'#5 0'12$"&")3('#&1 :'.%5")3$(2"11'#5< "4546)1"#1($1 C/"#&'*'2%&'(#)(*)1&$-2&-$"1 Meshless approaches :'.%5")3$(2"11'#5)%#/)1"5."#&%&'(#< 9"%1-$"/ 0%&% E'&&'#5)(*)5"(."&$'2)1-$*%2"1 Surface based approaches 7(-#/%$8 :5"(."&$'2).(/",'#5< 2(#/'&'(#1 Seg3D !"#"$%&'(#)(*)+(,-.").(/",) :."1;'#5< =33,'2%&'(#)(*)&'11-")3%$%."&"$1>?(-#/%$8) ! " BioMesh3D # $ % & " 2(#/'&'(#1)%#/)2(.3-&%&'(# ' % ( " ) :1'.-,%&'(#6)"1&'.%&'(#< * @"$'*'2%&'(#)A)"+%,-%&'(#)(*)$"1-,&1 :1'.-,%&'(#6)"$$($)+'1-%,'B%&'(#< SCIRun ImageVis3D + map3d

Center Software Infrastructure Introduction Seg3D (segmentation) SCIRun (Prototype testing) BioMesh3D (Meshing) SCIRun Infrastructure Core Layer Algorithm Layer Control Layer ImageVis3D (Visualization) Command line tools Flexible, Extensible Environment map3D (Visualization) Open Source Software (MIT Public License) Problem Solving Environment (BioPSE) Matlab/Python PowerApps (Seg3D, ImageVis3D, BioMesh3D, Shapeworks) Linux, Mac OSX, Windows Biomedical Research Impact Introduction

Clinical Impact Introduction Atrial Fibrillation Clinical Impact Introduction Simulation of Defibrillation

Clinical Impact Introduction Deep Brain Stimulation Clinical Impact Introduction Cardiac Arrhythmias & Ischemia

Key Center Personnel Introduction PI’s • Chris Johnson • Rob MacLeod • Ross Whitaker • Dana Brooks Technical Management • Liz Jurrus Administrative Team • Deb Zemek • Greg Jones • Corinne Garcia Workshop People Introduction Rob Dana Josh Liz Tom Ayla MacLeod Brooks Levine Jurrus Fogal Kahn Brett Burek Darrell Jess Dafang Burton Erem Swenson Tate Wang Burek

Schedule Introduction