Enhancing Diptera systematics: from single researcher to global - - PowerPoint PPT Presentation

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Enhancing Diptera systematics: from single researcher to global specimen data network

Torsten Dikow

@TDikow 0000-0003-4816-2909 #asiloidfmies #USNMDiptera

Smithsonian

doi: 10.6084/m9.fjgshare.3969156

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Towards a biodiversity knowledge graph – Roderic Page

› doi:10.3897/rio.2.e8767 biodiversity knowledge graph doi: 10.6084/m9.fjgshare.3969156

• pen-access

unique identifjers

3 sharing research data doi: 10.6084/m9.fjgshare.3969156

◊ Make your … online

› data ready for re-use and re-purposing by others › data easily recoverable through openly accessible data repositories › data easily recoverable through use of persistent + unique identifjers

◊ doesn’t mean to share data before publication

› biorxiv.org

4 unique, persistent identifjers doi: 10.6084/m9.fjgshare.3969156

◊ Digital Object Identifjer – DOI

› CrossRef, DataCite, and many more can mint DOIs › resolvable through dx.doi.org

◊ Archival Resource Key – ARK

› resolvable through ezid.cdlib.org

› dx.doi.org › ezid.cdlib.org

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◊ Universally Unique Identifjer – UUID and Globally Unique Identifjer – GUID

› for human-readable display, common format using hexadecimal text with inserted hyphens › e.g., E26A52B5-1CB0-44D5-98EE-3C50D2E374AF

◊ Life Science Identifier – LSID

› e.g., ZooBank records

› ZooBank record unique, persistent identifjers

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◊ specimen identifjers ◊ Darwin-Core Triplet – USNMENT01087716

› institutionCode = USNM › collectionCode = ENT (for Entomology) › catalogNumber = 01087716

◊ Apioceridae: Apiocera braunsi holotype

› USNM collection web-site http://n2t.net/ark:/65665/30f1b900b-6ca7-4e03-9629-5d6a3a6e3173 › GBIF http://www.gbif.org/occurrence/1060462205

› USNMENT01087716 at USNM › USNMENT01087716 at GBIF unique, persistent identifjers

7 doi: 10.6084/m9.fjgshare.3969156 unique, persistent identifjers

◊ researcher identifjer ◊ ORCiD – 0000-0003-4816-2909 ◊ ZooBank identifjer

› links all taxa and publications of an author › F8869067-4618-4CCE-960C-E8A107F162FB

› orcid.org/0000-0003-4816-2909 › ZooBank LSID

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images, micrographs names specimens data sets, raw data, alignments

data repositories doi: 10.6084/m9.fjgshare.3969156

morphological matrices raw sequences phylogenetic analyses + trees 3D data

9 data repositories doi: 10.6084/m9.fjgshare.3969156

√ √ √ √ √ √

10 › blog post: bit.ly/1j0BNXD linking specimens doi: 10.6084/m9.fjgshare.3969156

11 doi:10.5061/dryad.3c0f1 › NCBI PRJNA183205 › DRYAD doi:10.5061/dryad.3c0f1 linking data doi: 10.6084/m9.fjgshare.3969156 Misof et al. 2014 data doi:10.1126/science.1257570

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◊ data sharing

› data can be retrieved easily by peers and scientifjc community at large › data can be easily re-used, re-evaluated, and scientifjcally tested › observations can be replicated (e.g., high-resolution images, 3D data, raw sequence reads)

◊ benefjts

› researcher, taxonomic community, scientifjc community at large, and the public › institutions › funding sources demand open-access of data

doi: 10.6084/m9.fjgshare.3969156

13 biodiversity knowledge graph <–> data repositories

• pen-access

unique identifjers

doi: 10.6084/m9.fjgshare.3969156

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presentation PDF doi: 10.6084/m9.fjgshare.3969156

acknowledgements

◊ Rod Page, Deb Paul, Donat Agosti, and Lyubo Penev