chromozoom.org rethinking the UI of genome browsers Ted Pak Roth - - PowerPoint PPT Presentation

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chromozoom org rethinking the ui of genome browsers
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chromozoom.org rethinking the UI of genome browsers Ted Pak Roth - - PowerPoint PPT Presentation

Jul 07, 2023 177 likes •419 views

chromozoom.org rethinking the UI of genome browsers Ted Pak Roth Laboratory Donnelly Centre, University of Toronto Samuel Lunenfeld Research Institute, Mt. Sinai Hospital genome browsers: lots of data small viewable area UCSC, GBrowse,

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chromozoom.org rethinking the UI

  • f genome browsers

Ted Pak Roth Laboratory Donnelly Centre, University of Toronto Samuel Lunenfeld Research Institute,

  • Mt. Sinai Hospital
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genome browsers:

small viewable area

lots of data

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UCSC, GBrowse, etc.

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?

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?

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maintaining immersion

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fluidity

action reaction

positional awareness

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no spinners no progress bars no loading screens just drive

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live demo

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current highlights

  • 19 yeast tracks from UCSC
  • Search with autocomplete
  • Speedy, smooth zoom & pan
  • Contextual tooltips for regions
  • Share links to exact views
  • Open source
  • Custom data supported...
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custom tracks

  • Drawn with JavaScript
  • Can do:
  • BED and bigBed (exons only)
  • WIG, bigWig, and bedGraph
  • VCFTabix
  • Should be easy to add more
  • big* formats: best performance
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division of labor

centralized data custom data pre-render on server PNG tiles render on client

<canvas>

+

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http://chromozoom.org

in particular, my advisor Fritz Roth the entire Roth laboratory and Michael Cherry, for inviting me.

thank you!