chromozoom.org rethinking the UI of genome browsers Ted Pak Roth - PowerPoint PPT Presentation

Jul 07, 2023 •177 likes •418 views

chromozoom.org rethinking the UI of genome browsers Ted Pak Roth Laboratory Donnelly Centre, University of Toronto Samuel Lunenfeld Research Institute, Mt. Sinai Hospital genome browsers: lots of data small viewable area UCSC, GBrowse,

chromozoom.org rethinking the UI of genome browsers Ted Pak Roth Laboratory Donnelly Centre, University of Toronto Samuel Lunenfeld Research Institute, Mt. Sinai Hospital
genome browsers: lots of data small viewable area
UCSC, GBrowse, etc.
?
?
maintaining immersion
fluidity action reaction positional awareness
no spinners no progress bars no loading screens just drive
live demo
current highlights • 19 yeast tracks from UCSC • Search with autocomplete • Speedy, smooth zoom & pan • Contextual tooltips for regions • Share links to exact views • Open source • Custom data supported...
custom tracks • Drawn with JavaScript • Can do: - BED and bigBed (exons only) - WIG , bigWig , and bedGraph - VCFTabix • Should be easy to add more • big* formats: best performance
division of labor custom data centralized data pre-render on server render on client + <canvas> PNG tiles
http://chromozoom.org thank you! in particular, my advisor Fritz Roth the entire Roth laboratory and Michael Cherry, for inviting me.

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