Analysis and classification of the DNA Analysis and classification - - PowerPoint PPT Presentation

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Dec 31, 2022 213 likes •314 views

Analysis and classification of the DNA Analysis and classification of the DNA sequence of TARA 7S_3634040 sequence of TARA 7S_3634040 Presentation of the DNA sequence Presentation of the DNA sequence Tanger TARA7S_3634040 genomic DNA

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Analysis and classification of the DNA Analysis and classification of the DNA sequence of TARA 7S_3634040 sequence of TARA 7S_3634040

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Presentation of the DNA sequence Presentation of the DNA sequence

AGTCACAACATCGCCACAACATCACGCAGATTTGTTTCATGCAACATGCGGTGGTATGGGGCTTACTGGAATAATCATAAGTGCAACTATTCAGCTGCTTCCCATCAAATCTTCGTTAATTTCTCAGA AAACAATTAAGGCGGACTGTATAGAAGAGGCATGTGAAGTCTTTGAGATTAATAGTGATGCTACTTACAGCGTTGCATGGATAGATTGCCTCAGCAAAGGGAAAAGCCTTGGGCGTAGTGTGATA ATGCTTGGTGAGCATGCATCGCAAGGTGGATTAGATATTGATATACGACAGAAAGTCTCTGTTCCGTTTTCTACTCCATCTGCGTTACTTAACAGTCTAACAGTGAAGGCCTTTAACGCCGCTTATTG GCACAAATCAAGGCAAAACCTAAGTCAGACAGTTGGGCTTATGCCTTACTTTTATCCGTTAGATACTGTAGGTGAGTGGAATAGGTTGTACGGTAAAAAGGGATTTTTGCAATTTCAGTGTGTCGT GCCTAAGCTCGATGGCGTCGCAAATATGCGTAAGCTCTTAACTGAAATCTCCAACAGCGGCGAAGGTTCGTTTCTAGCAGTACTTAAGCAGTTTGGAATTGCTAATGAGAACCTTCTCTCATTTCCA ACAGAAGGTTACACATTGGCACTAGACTTTAAGGCTTCAGAAACAGCAATAAAGACGGTAAAAGACTTGAAGATATGGTGGTAGGTATGGGTGGAAGGCTGTACCTAACGAAAGACGCAGTAATG CAAGAAAGCACCTTTAAAGCGACATATCCAAACTGGGAAAAGTTTGAGGTAGTGCGAGAACAATATGGTGCGATTGGAAAGTTTAGTTCCACTCAGTCAAAACGCTTAGGATTAGCATGAAGAGAA TTTTAATTATTGGGGCGACGTCAGCTATTGCGGAGCACTGTGCGCGGATTTGGGCTGCTAGAGGTGATGATTTGCACTTAGTGGCTAGAAATGAACAGCACGTTCAAACAATCG CAGCTGACTT

Tanger

TARA7S_3634040 genomic DNA (Tanger-Alger, station 7 [SRF])

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Transcription and translation Transcription and translation

Use of Open Reading Frame (ORF)

VTTSPQHHADLFHATCGGMGLTGIIISATIQLLPIKSSLISQKTIKADCIEEACEVFEINSDATYSVAWIDCLSKGKSLGRSVIMLGEHASQGGLDIDIRQKVS VPFSTPSALLNSLTVKAFNAAYWHKSRQNLSQTVGLMPYFYPLDTVGEWNRLYGKKGFLQFQCVVPKLDGVANMRKLLTEISNSGEGSFLAVLKQFGIAN ENLLSFPTEGYTLALDFKASETAIKTVKRLEDMVVGMGGRLYLTKDAVMQESTFKATYPNWEKFEVVREQYGAIGKFSSTQSKRLGLA*

Sequence of 292 amino acids

Universal genetic code

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BLAST BLASTP

P

« FAD-linked oxidase » found in a a gammaproteobacterium.

Basic Local Alignment Search Tool

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Phylogeny of the studied peptidic sequence Phylogeny of the studied peptidic sequence

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The other sequences The other sequences

GCTTGAGATACTGTTTTGGAGTTTAATTGTTGTCACATGGATTACCGTTGGCATGCACGTAGTCAAGAATTTATAAGATTCAAAAGGAGTAAAGATGATTGAACCAAATATGAAAAAACCTAGTTTGTTCAGAAGAGCTTTATTGA AATTTGTAAGCGGTTGGAGAAGAATAATGGATGTAAGATATAACCCATTAAAATATATACCAGATCCAAGTTTGCAGACATACTTTATGTTGGTTTTGTTCACTATATGGAGTGTGTTTTTTGGATTTTTGGCAGCAAATTACTTGG GGTTTTTTAACTACAATACGGTTGCAAGTATAATAATTCATATCGCAATAATATTACCTTTAGCATTTACAAATGCAGTCTTTGTTGATGCAGAAAGAGATGGTGATAAATGGTTAAAAGAATGGAAGGAAGAGCAATCCAGATACA AGTTAGTTATGAACAGGCTCAAAACCAAAAATTTAGTGATATGGAATCCAAACAAGGAATCATAATTATATAAATAACATTATGTTGGTGGTATAAGCTGACCTATTTCATTAAAGATTGCAGTATCTCAGGATTTTCCTGCAGAGC GGCTACAACATTTTGACTTAATTCTTGAGCATCGGAGCCCACCAATAGCATTGATTTTTCAACCATTAGAGATTGTTTATTGGTGATTGATTTTCCTTCTTTTGTCTTCATGAAATTATATAAAGCAGTTATTTCATCATAAGAGTAAA CATCTTTATATAAATCGGGCATCTTTTTTTCAATTTTTAAGAGATACTCTTTTATAAATGGCTTTAGAAAATCACTCATCGCCTTACTTTTGATATCCATTCCAATTGTTTGAAGCATGGTACCCATTGCATTAGTCATAGTATCTTCCT GTTGCGAAAGAAACTGTTCTTTGACAATAAAATCTACCATTTCATCCATAGAAATATCTTCAGATGATATAAAAAGGGTTGAGAACAATAAAATGCATAAGGATAATTTTTTCATGTATTTAA

DNA sequence TARA23S_3634010

DSKGVKMIEPNMKKPSLFRRALLKFVSGWRRIMDVRYNPLKYIPDPSLQTYFMLVLFTIW SVFFGFLAANYLGFFNYNTVASIIIHIAIILPLAFTNAVFVDAERDGDKWLKEWKEEQSR YKLVMNRLKTKNLVIWNPNKES*

Transcription/Translation BLASTp

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Thanks to :

Pascal Hingamp, Genomic and Structural Information Laboratory, Aix Marseille University for his precious help and the provision of the website www.annotathon.org

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