Using and Searching the Crystallography Open Database (COD) Saulius - - PowerPoint PPT Presentation

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Dec 10, 2023 224 likes •290 views

Using and Searching the Crystallography Open Database (COD) Saulius Graulis Montreal, 2014 Vilnius University Institute of Biotechnology 1 / 6 Software for accessing COD Subversion Free (as in freedom) and open source Revision

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Using and Searching the Crystallography Open Database (COD)

Saulius Gražulis Montreal, 2014

Vilnius University Institute of Biotechnology

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SLIDE 2

Software for accessing COD – Subversion

Free (as in “freedom”) and open source

Revision Control System Subversion: Software:

Android: OASVN on F-Droid or GPlay Linux (Ubuntu): https://subversion.apache.org/ sudo apt-get install subversion Mac: https://code.google.com/p/svnx/; http://versionsapp.com/ (commercial?) Windows: Tortoise SVN – http://tortoisesvn.net/

Documentation: Version control with Subversion Note: experts can use Git as well.

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SLIDE 3

MySQL client

MySQL database client: Software:

Android: ? Linux (Ubuntu): http://packages.ubuntu.com/search?keywords=mysql-client sudo apt-get install mysql-client Mac, Windows, Linux (Ubuntu): Tortoise SVN – http://dev.mysql.com/downloads/workbench/ sudo apt-get install mysql-workbench

Documentation: Oracle MySQL documentation

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SLIDE 4

MyWebSQL

A Web client

Server-side Web-based MySQL client: Software: http://mywebsql.net/ Documentation: http://mywebsql.net/docs/

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SLIDE 5

COD tools

Perl Programs for COD

Command line utilities to manipulate CIFs: Software: svn://www.crystallography.net/cod-tools

svn co svn://www.crystallography.net/cod-tools/trunk cod-tools

Documentation: Ehhh... for now, just run: cif_program --help

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SLIDE 6

Thank you!

http://en.wikipedia.org/wiki/Topaz http://www.crystallography.net/2207377.html A path to freedom: GNU → Linux → Ubuntu → MySQL → R → L

E X→ TikZ → Beamer