Towards Using Explicit Semantics in Life Science Workflows Pisa - - PowerPoint PPT Presentation
Towards Using Explicit Semantics in Life Science Workflows Pisa June 2007 Dr. Jos F. Aldana Montes (jfam@lcc.uma.es) Ismael Navas Delgado (ismael@lcc.uma.es) Goals - To detect common problems in bioinformatics (from our experience): Lack
Ismael Navas Delgado (ismael@lcc.uma.es)
PROTEIN SEARCH GENE SEARCH PROTEIN ALIGNMENT S T R I N G ( A P R O T E I N ) STRING (A GENE) S T R I N G ( A P R O T E I N ) STRING (A PROTEIN)
PROTEIN SEARCH PROTEIN EXTRA INFORMATION FASTA SEQUENCE PIR SEQUENCE
EXPERT USERS NON EXPERT USERS
WORKFLOW EDITOR MATCHMAKER QUERY ENGINE SEMANTIC WEB SERVICE DATABASE WORKFLOW DATABASE WORKFLOW MANAGER WORKFLOW INTERFACE ENACTOR
SERVICE SERVICE SERVICE
ADAPTORS
EXPERT USERS
WORKFLOW EDITOR MATCHMAKER QUERY ENGINE SEMANTIC WEB SERVICE DATABASE WORKFLOW DATABASE WORKFLOW MANAGER
NON EXPERT USERS
QUERY ENGINE SEMANTIC WEB SERVICE DATABASE WORKFLOW DATABASE WORKFLOW MANAGER WORKFLOW INTERFACE ENACTOR
SERVICE SERVICE SERVICE
ADAPTORS
PROTEIN SEARCH PROTEIN EXTRA INFORMATION PROTEIN SEQUENCE (FASTA SEQUENCE) PROTEIN SEQUENCE (PIR SEQUENCE)
ADAPTOR: FASTA TO PIR