Promoting a functional and comparative understanding of the conifer - - PowerPoint PPT Presentation

▶
promoting a functional and comparative understanding of
SMART_READER_LITE
LIVE PREVIEW

Promoting a functional and comparative understanding of the conifer - - PowerPoint PPT Presentation

Mar 28, 2023 156 likes •287 views

Promoting a functional and comparative understanding of the conifer genome implementing applied aspects for more productive and adapted forests ProCoGen Project: FP7 289841 Work programme topic: KBBE 2011 1 1 01 Promoting conifer

slide-1
SLIDE 1

Promoting a functional and comparative understanding of the conifer genome‐ implementing applied aspects for more productive and adapted forests ProCoGen

Project: FP7‐ 289841 Work programme topic: KBBE 2011 1 1‐01 Promoting conifer genomic resources Work programme topic: KBBE.2011.1.1‐01 Promoting conifer genomic resources Call identifier: FP7‐KBBE‐2011‐5

ProCoGen KoM, Alcalá March 2012

slide-2
SLIDE 2

ProCoGen consortium

Partners Partners

ProCoGen 21 participants (*): 19 from Europe (11 countries) 2 from Canada

ProCoGen KoM, Alcalá March 2012

slide-3
SLIDE 3

ProCoGen Management Structure

  • Dario Grattapaglia EMBRAPA Brazil

External Advisory Board

  • Dario Grattapaglia, EMBRAPA, Brazil

Key competence: Forest Genomics (eucalypt)

  • Matias Kirst, University of Florida, USA

Key competence: Fundamental and Applied Genomics of Forest Trees (eucalypt poplar and pine) (eucalypt, poplar and pine)

  • Malcolm Campbell, University of Toronto, Canada

Key competence: Plant Cell & Developmental Biology, Functional Genomics & Genetics

  • José Luis García CSIC Spain
  • José Luis García, CSIC, Spain

Key competence: NGS

  • Ingo Ensminger, University of Toronto, Canada

Key competence: Adaptation to climate change

  • Stephen Cavers NERC Centre for Ecology and Hydrology UK
  • Stephen Cavers, NERC Centre for Ecology and Hydrology, UK

Key competence: Pine genetic diversity, gene flow and adaptation

  • Julian Pérez, SECUGEN, Spain

Key competence: NGS

  • Jeffrey Dean University of Georgia USA
  • Jeffrey Dean, University of Georgia, USA

Key competence: Functional genomics

  • Daniel Peterson, Mississippi State University, USA

Key competence: Genome sequencing

ProCoGen KoM, Alcalá March 2012

slide-4
SLIDE 4

M t t t d d

ProCoGen Management Structure

Management structures and procedures

European Commission

progress reports

Administrative & Financial Coordination: Carmen Díaz-Sala (UAH) ScientificCoordination: María Teresa Cervera (INIA-CIFOR) Management (WP7) IPR team P C G Executive Board (WP leaders) Dr.Carmen Díaz Sala (UAH), Administrative and Financial Coordinator and WP7 leader;

  • Dr. Pär Ingvarsson (UMU), WP1 leader; Dr. Francisco Cánovas (UMA), WP2 leader; Dr.

Yves Van de Peer (VIB), WP4 leader; Dr. Léopoldo Sanchez (INRA), WP5 leader; Dr. ProCoGen Secretariat

advice Progress & plans approve plan suggest plan

Berthold Heinze (BFW), WP6 leader Chaired by Dr. María Teresa Cervera (INIA-CIFOR), ProCoGen Scientific Coordinator and WP3 leader External Advisory Board General Assembly

(1 vote / participant)

Chaired by Administrative & progress reports change requests implement plan changes plan changes plan changes

ProCoGen consortium

Administrative & Financial Coordinator

ProCoGen KoM, Alcalá March 2012

slide-5
SLIDE 5

ProCoGen Management Structure

Meeting schedule Meeting schedule

Meeting EAB GA Meetings Kickoff Annual Meetings EB Meeting WP Meeting M12 M12 M3 M12 Once every At least M12, M36 M12, M24, M36 M48 M3 M12, M24, (Project Review) Once every two months starting At least

  • nce a year

Time M36, M48 (Int. Symp) M3 Sweden, Austria Sweden, Spain Spain Sweden, Spain Videoconfe rence Videoconfe rence Location Austria Spain, Austria, France Spain, Austria, France rence rence

ProCoGen KoM, Alcalá March 2012

slide-6
SLIDE 6

ProCoGen information exchange

European Commission European Commission ProCoGen coordinators Scientific i f ti General information WP leaders information Administrative and financial information Task / subtask leaders Group leaders

Conflict, risk assessment and contingency plan

ProCoGen KoM, Alcalá March 2012

involving intermediate levels

  • f management
slide-7
SLIDE 7

ProCoGen Management Structure

Administrative outcomes of the Kick off meeting Kick‐off meeting

  • Detailed work plan
  • Schedule
  • Provide information about the most common
  • Provide information about the most common

administrative and financial issues and modifications

ProCoGen KoM, Alcalá March 2012

slide-8
SLIDE 8

Ramón Areces FoResTTraC Precedent Banbury International Workshop on Conifer Genomics D Neale G Howe J Dean Ramón Areces International Symposium on New frontiers in forest genomics FoResTTraC Workshop on Genomics of Conifers M.T. Cervera, C Dí S l NoE EVOLTREE Workshop on Forest Ecosystem

  • D. Neale, G. Howe, J. Dean,
  • M. Greenwood
  • C. Díaz‐Sala, M.T. Cervera
  • C. Díaz‐Sala

Forest Ecosystem Genomics and Adaptation ICI: J. Mackay FoResTTraC 2007 2008 2009 2010 2011 2012 Preparation of the ProCoGen

*

Conifer Reference S i S i p topic Functional understanding of the conifer genome

Support from:

SMarTForests Genome Canada FP7 KBBE grant

*

Sequencing Steering Committee Meetings PAG XVI & IUFRO‐ CTIA 2008

Support from: ‐ National delegations ‐ Forest‐based Sector Technology Platform (FTP)

PineRefSeq USDA grant grant

*

Spruce Genome Project Swedish grant ProCoGen KoM, Alcalá March 2012

slide-9
SLIDE 9

Background

Projects developed in Europe Projects developed in Canada

EVOLTREE: FP6 NoE TREEBREDEX: CA FP6 Research Infrastructures, NovelTree: KBBE‐2007‐1‐2‐05 FP7 FoResTTraC: CSA ENV.2009.2.1.6.2 FP7 Arborea: Genome Québec. PIs: J MacKay, Jean Bousquet (Université Laval) Treenomix: DIGENFOR: Trilateral Co‐Operation in Plant Genomics SUSTAINPINE: Trilateral Co‐Operation in Plant Genomics Plant‐ KBBE 2009 LinkTree: ERA‐NET BiodivERsA National grants for genome sequencing: (Spain) National projects Genome British Columbia Science Opportunities Fund. PIs: Joerg Bohlmann & Kermit Ritland (UBC) Pilot Studies and Resource Development for Conifer Genome Sequencing: Genome Québec National grants for genome sequencing: (Spain) National projects + collaborative projects: Gen2For: Red Española de Genómica y Recursos Genéticos

  • Forestales. Spanish MICINN

Participación en la primera fase de la iniciativa internacional para la secuenciación del genoma de pino: AACC‐2008 i Genome Québec PIs: John MacKay, Jean Bousquet (Université Laval) Conifer genome exploration Genome British Columbia Science Opportunities Fund. PI: Kermit Ritland Co‐Applicants: DG Peterson (Mississippi State i i ) ( i i é l) Pinegenseq: AACC‐2010 University, USA); J MacKay (Université Laval) Investigations into pine genome structure using BACs / BAC sequencing: Program: CSP 2009 DOE JGI

Projects developed in USA

Program: CSP 2009, DOE JGI PIs: DG Peterson (Miss. State Univ.), JFD Dean (Univ. of Georgia), CD Nelson (USDA Forest Serv.), RR Sederoff (N.Carolina State Univ.), and DS Rokhsar EST discovery in conifers: DOE PIs: JFD Dean (Univ. of Georgia), GT Howe (Oregon State Univ.), Kathleen D. Jermstad (U.S. Forest Service), DB Neale and DL Rogers (Univ. of California, Davis) Gymnosperm Tree of Life conifers, phylogeny and sequencing development Comparative Resequencing in the Pinaceae (7 species): UC Davis (PI)

ProCoGen KoM, Alcalá March 2012

slide-10
SLIDE 10

ProCoGen structure

R&D Work Packages

Development of i Discovery of adaptive capacities to ensure Genomic Resources (WP1) capacities to ensure basic and applied

  • utcomes (WP2)

Computational Genomics (WP4) Comparative Genomics (WP3) Translational Genomics (WP5) (WP5)

ProCoGen KoM, Alcalá March 2012

slide-11
SLIDE 11

WP7: Project Management

ProCoGen structure j g

Leader: UAH Partners : UAH, INIA, All Partners

WP4: Computational Genomics

Conifer Genomics initiatives

p

Leader: VIB Partners : VIB, BSC, CRG initiatives worldwide

WP1: Genomic resources WP2: Adaptive capacities WP1: Genomic resources

Leader: UMU Partners : INIA, UMA, UMU, VIB, UOULU, ULaval, UBC, UVEG

WP2: Adaptive capacities

Leader: UMA Partners : UAH, INIA, UMA, INRA, FCBA, IBET, NFLI, SLU

WP5: Translational Genomics

Leader: INRA

WP3: Comparative Genomics

Leader: INIA Partners : INIA, INRA, FCBA, BFW, UOULU, CNR, UEDIN, DLO, FR, SLU Partners : INIA, UMA, INRA, UMU, VIB, UOULU, FR, ULaval, UBC Conifer Breeding and Conifer Genetic Resource Management Industral Stakeholders: Forest and

WP6: Integration & Dissemination

Forest and Biotechnology sectors Leader: BFW Partners: All

ProCoGen KoM, Alcalá March 2012

slide-12
SLIDE 12

ProCoGen structure

ProCoGen KoM scientific goals: Organization of activities planned for the first 18th months. Guarantee the achievement of deliverables and milestones: li d i l i f i f b Ensure quality and timely information transfer between partners, tasks and WPs. P C G i “I t t d P j t” C l ProCoGen is an “Integrated Project” Complex

  • rganization. Promote fluid communication between

partners, partners & task leaders, task leaders & WP leaders as well as WP leaders & coordinators (risk management and as well as WP leaders & coordinators (risk management and contingency plans).

WP leaders & Coordinators & WP leaders Partners & Task leaders WP leaders & Task leaders

ProCoGen KoM, Alcalá March 2012

Partners as eade s

Virtual meetings every two months