IN-SPIRE Training Office of Portfolio Analysis Division of Program - - PowerPoint PPT Presentation

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IN-SPIRE Training Office of Portfolio Analysis Division of Program - - PowerPoint PPT Presentation

Dec 07, 2022 305 likes •543 views

IN-SPIRE Training Office of Portfolio Analysis Division of Program Coordination, Planning, and Strategic Initiatives National Institutes of Health Todays Instructors: Patricia Forcinito and Matt Perkins OPA_T#1192_Dec-13-2016 Office of

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

IN-SPIRE Training

Office of Portfolio Analysis Division of Program Coordination, Planning, and Strategic Initiatives National Institutes of Health Todays Instructors: Patricia Forcinito and Matt Perkins

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Mission of the Office of Portfolio Analysis

Consult & Collaborate Disseminate Best Practices

Classroom Training (Custom Classes Available) Online Training Web Resources (Case Studies, FAQs) Office Hours Symposia

Develop New Methods Build Tools Facilitate Data Cleaning & Analysis

Support data-driven decision-making OPA Director:

  • Dr. George Santangelo

https://dpcpsi.nih.gov/opa/index

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

iSearch

iSearch is NIH’s next-generation portfolio analysis platform, providing comprehensive, easy-to-use access to a carefully curated, extensively linked data set of global grants, patents, publications, clinical trials, and drugs.

https://itools.od.nih.gov/dashboard/#login

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Part 1

  • Understand how IN-SPIRE works and what it might

be used for.

  • Learn how to import a dataset, do some

visualizations and export results. Part 2

  • Learn how to use the following features:
  • Searches
  • Search Networks
  • Time Tool
  • Correlation
  • Facets

Course Objectives

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

  • Developed by Pacific Northwest National Laboratory

(PNNL) to help analyze huge datasets

About IN-SPIRE

  • Can help understand data in two different ways:

– Convergent

  • Focusing on a particular set of information or relationships.
  • Add efficiency to the process of analyzing large

datasets.

– Divergent

  • Remaining open to potentially interesting information or

relationships.

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Examples of IN-SPIRE use in portfolio analysis

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1 2 3 4 5 6 15 16 17 18 19 20 7 8 9 14 13 12 10 11

IC (b) IC (a)

Is there overlap between agencies/ICs/divisions?

IN-SPIRE Galaxy View Applicable for other comparisons, eg:

  • between NIH & non-NIH grants
  • Different NIH POs working in the

same research area etc.

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Evolution of Portfolios: Stem Cell Research Year 2009

Searched QVR for “Stem Cell” in Title and Abstract 291 Projects IN-SPIRE ThemeView Classic brain, nscs, nsc Human, gene, embryonic

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

193 Projects

Year 2013 Evolution of Portfolios: Stem Cell Research

IN-SPIRE ThemeView Classic Neurons, brain, neural stem cells

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Identify training activities in T34 grants

  • Identify Portfolio.
  • Use Search Networks to

combine range of Search Terms and group to create categories.

  • Develop understanding of

training activities.

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Understanding datasets / Manual Coding

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

How does IN-SPIRE create a visualization with my documents?

Today’s example: Excel Spreadsheet with grants belonging to the transplantation portfolio

Source Dataset i.e. grants, pubs, etc.

Text to be mined by IN-SPIRE Title Abstract Specific Aims

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

How does IN-SPIRE create a visualization with my documents?

Determines distinguishing words called “Major Terms” scan Identifies the terms that are least randomly distributed Uses these distinguishing words to create a signature for each document Signature generation clustering IN-SPIRE groups the documents into clusters based on their signature similarity. projection Clusters are arranged in a high- dimensional space and then flattened down to a 2D graph

Source Dataset i.e. grants, pubs, etc.

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

IN-SPIRE Visualization Galaxy View

  • Each document is represented by a

dot or “star” in the “sky”

  • Documents are cluster together

according to their content similarity

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

IN-SPIRE Visualization ThemeView Classic 3-D representation of the clusters

  • By default the peak height represents number of documents
  • Peak height can be adjusted to represent for example: total awarded $, etc.
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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Demonstration followed by hands on exercise

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

  • Learn:
  • Searching
  • Groups
  • Search networks
  • Time tool: documents, groups, flows
  • Correlation tool
  • Facets tool

Part 2: Objectives

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Search Networks

  • Similar to searches / groups.
  • Two advantages:
  • Useful for combining a number of

searches and visualizing results.

  • Search networks can be saved and

copied to other projects or shared between users

  • Can use searches created in search

function (and groups) or create new

  • nes.
  • Links between searches are easy to

create and remove.

  • Values update when new data is loaded.
  • OPA guidance here: https://opa-

trainingportal.od.nih.gov/?page_id=961

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Sharing Search Networks

  • Once you’ve created a Search Network, it will appear in the project folder, and

can be dragged to other projects to use on other datasets.

  • To transfer Search Networks to another user:
  • Copy to Home folder
  • Log out of IN-SPIRE.
  • Use the IN-SPIRE Meta Data Sharing tool (likely to be at):
  • C:\Users\perkinsmj\INSPIRE\bin\Meta Data Sharing
  • Follow the process in reverse to import.
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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

http://in-spire.pnnl.gov/government.stm

How do I get access to the tool?

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

Leave empty

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Office of Portfolio Analysis

OPA_T#1192_Dec-13-2016

During today’s class we covered:

  • How IN-SPIRE works and what it might be used for
  • How to import a dataset (differences within computation,

categorical, date, and numeric fields)

  • How to get IN-SPIRE main visualizations (Galaxy View and

Theme View Classic)

  • Used:
  • Search feature
  • Created groups using multiple methods
  • Search networks
  • Time tool
  • Correlation tool
  • Facets tool

QUESTIONS?