identify new metabolites of dietary monoterpenes Jarlei Fiamoncini - - PowerPoint PPT Presentation

identify new metabolites of dietary monoterpenes
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identify new metabolites of dietary monoterpenes Jarlei Fiamoncini - - PowerPoint PPT Presentation

In silico prediction of metabolism as a tool to identify new metabolites of dietary monoterpenes Jarlei Fiamoncini Food Metabolome and the Metabolism of Food Compounds Food metabolome is the part of the metabolome derived from the digestion and


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SLIDE 1

In silico prediction of metabolism as a tool to identify new metabolites of dietary monoterpenes

Jarlei Fiamoncini

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SLIDE 2

Food metabolome is the part of the metabolome derived from the digestion and metabolism of food.

Food Metabolome and the Metabolism of Food Compounds

The more we know about food compounds metabolism, the better we can study the effects of diet in health. Dietary monoterpenes are a part

  • f

the food metabolome that remains poorly studied.

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SLIDE 3

Dietary Monoterpenes

  • Formed by the condensation of 2 isoprene units
  • Low molecular weight and relatively high lipophilicity

Limonene Isopentenyl pyrophosphate Dimethylallyl pyrophosphate Geranyl pyrophosphate Geraniol

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SLIDE 4

Dietary Monoterpenes

  • Formed by the condensation of 2 isoprene units
  • Low molecular weight and relatively high lipophilicity

Limonene Isopentenyl pyrophosphate Dimethylallyl pyrophosphate Geranyl pyrophosphate Geraniol

Demonstrated effects

Antinociceptive Antimicrobial Hypotensive Anti-inflammatory Hypoglycemic (STZ diabetic mice) Antioxidant Antineoplasic Modulators of the activity of ion channels Toxic effects

  • Found in the essential oil of herbs and citrus fruits
  • Daily intake up to 200 mg
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SLIDE 5

 Both in humans and rats, dietary terpenes reach effective concentrations in plasma within 1 hour  Their metabolites are detected in circulation up to 24 hours after intake  Topic administration of terpenes is also effective to increase their concentration in plasm

Pharmacokinetics of Monoterpenes

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SLIDE 6

Despite recognized health effects, the metabolism of dietary terpenoids is poorly known Different isomers for each compound make terpenoids analysis very complex.

Problems

 Identify enzymatic reactions involved in the metabolism of terpenoids  Validate metabolism predictions  Identify new metabolites of dietary terpenoids

Aims of the study

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SLIDE 7

1,4-Cineole

lime eucalyptus

Citral

lemongrass lemon balm eucalyptus

Fenchone

fennel

Myrcene

hop

Pulegone

mint

Camphene

thyme

Citronellal

lemon balm

Geraniol

lemon grass citronella geranium

Nootkatone

grapefruit

Terpinen-4-ol

juniper

Carvacrol

thyme

Cuminaldehyde

eucalyptus myrrh

Limonene

  • range

p-Cymene

cumin thyme

Thymol

thyme

Carvone

caraway spearmint

D-Camphor

camphor tree

Linalool

rosewood coriander

Perillyl alcohol

lavender sage

Tested dietary terpenoids

Caryophyllene

clove cannabis rosemary

1,8-Cineole

eucalyptus

Menthol

mint

Pinene

pine

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SLIDE 8

Training

defining the reactions involved in the the metabolism of dietary monoterpenes

Predict ictio ion

using selected reactions to predict the metabolites of monoterpenes

in viv ivo experiment

feeding monoterpenes to rats and collecting metabolites-rich urine

Analysis

non-targeted high-resolution LC- MS analysis of urine in search of predicted metabolites

Investigation of Metabolism of Food Compounds

1 4 3 2

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SLIDE 9

Training

defining the reactions involved in the the metabolism of dietary monoterpenes

1

http://phytohub.eu/ https://www.lhasalimited.org

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SLIDE 10

Training

defining the reactions involved in the the metabolism of dietary monoterpenes

1

Cuminaldehyde metabolite 1 (M7) Cuminaldehyde metabolite 3 (M34) Cuminaldehyde metabolite 2 (M20)

Cuminaldehyde

  • xidation of primary alcohols

reduction of aldehydes

  • xidation of aldehydes

hydroxylation of aromatic methine hydroxylation of terminal methyl reduction of aldehydes Cuminaldehyde metabolite 5 (M6)

  • xidation of primary

alcohols Cuminaldehyde metabolite 4 (M140)

  • xidation of

aldehydes

  • xidation of primary alcohols

M2 M18

  • xidation of primary alcohols

M3 M31 M30

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SLIDE 11

Training

defining the reactions involved in the the metabolism of dietary monoterpenes

1

Biotransformation Name Phase Enzyme

Compounds that undergo the specific reactions

Allylic Hydroxylation Phase I CYP450

limonene nootkatone geraniol terpinen-4-ol perillyl alcohol linalool

Conjugation of Alkyl Carboxylic Acids with Glycine Phase II ACS, AANAT

geraniol terpinen-4-ol perillyl alcohol

Conjugation of Carboxylic Acids with Glutamine Phase II ACS, AANAT

geraniol

Epoxidation of 1,1,2-Trisubstituted Alkenes Phase I CYP450

limonene geraniol terpinen-4-ol perillyl alcohol linalool

Epoxidation of 1,1-Disubstituted Alkenes Phase I CYP450

limonene nootkatone perillyl alcohol

Epoxidation of Monosubstituted Alkenes Phase I CYP450

linalool

Glucuronidation of Aromatic Alcohols Phase II UGT

thymol

Glucuronidation of Carboxylic Acids Phase II UGT

thymol limonene nootkatone geraniol terpinen-4-ol perillyl alcohol cuminaldehyde linalool menthol

Glucuronidation of Primary and Secondary Aliphatic and Benzylic Alcohols Phase II UGT

thymol limonene nootkatone geraniol terpinen-4-ol perillyl alcohol cuminaldehyde linalool menthol

Hydroxylation of Alkyl Methine Phase I CYP450

nootkatone terpinen-4-ol menthol

Hydroxylation of Aromatic Methine Phase I CYP450

thymol cuminaldehyde

Hydroxylation of Methyl Carbon Adjacent to an Aliphatic Ring Phase I CYP450

nootkatone menthol

Hydroxylation of Methyl Carbon Next to an Aromatic Ring Phase I CYP450

thymol

Hydroxylation of Terminal Methyl Phase I CYP450

thymol terpinen-4-ol cuminaldehyde linalool menthol

Hydroxylation of Unfunctionalised Alicyclic Methylene Phase I CYP450

limonene nootkatone perillyl alcohol menthol

Oxidation of Aldehydes Phase I ALDH

cuminaldehyde

Oxidation of Primary Alcohols Phase I ADH

thymol limonene nootkatone geraniol terpinen-4-ol perillyl alcohol cuminaldehyde linalool menthol

Oxidation of Secondary (Alicyclic) Alcohols Phase I ADH

limonene nootkatone geraniol terpinen-4-ol perillyl alcohol menthol

Reduction of Aldehydes Phase I ALDR

cuminaldehyde

Reduction of Alicyclic Ketones Phase I ADH

menthol

Reduction of alpha,beta-Unsaturated Compounds Phase I abKDBR

nootkatone

Vicinal Diols from Epoxides Phase I EH

limonene nootkatone geraniol perillyl alcohol linalool

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SLIDE 12

Predic iction

using selected reactions to predict the metabolites of monoterpenes

2

1 138 3

Epoxidation of 1,1-Disubstituted Alkenes

LIMONENE

7 4

Vicinal Diols from epoxides

8 9 34 16 24

Oxidation

  • f

Secondary (Alicyclic) Alcohols

5

Allylic Hydroxylation Allylic Hydroxylation Allylic Hydroxylation

83

Glucuronidati

  • n of Primary

and Secondary Aliphatic and Benzylic Alcohols

30 154

Glucuronidation of Primary and Secondary Aliphatic and Benzylic Alcohols

165

Oxidation of Secondary (Alicyclic) Alcohols Vicinal Diols from epoxides Oxidation of Secondary (Alicyclic) Alcohols Glucuronidation of Primary and Secondary Aliphatic and Benzylic Alcohols

196 225

Oxidation of Secondary (Alicyclic) Alcohols

40

Glucuronidation

  • f Primary and

Secondary Aliphatic and Benzylic Alcohols

45

Glucuronidation of Primary and Secondary Aliphatic and Benzylic Alcohols

255 245

Oxidation

  • f Primary

Alcohols

62

Glucuronidation of Primary and Secondary Aliphatic and Benzylic Alcohols

64 69 68

Oxidation of Secondary (Alicyclic) Alcohols Glucuronidation of Primary and Secondary Aliphatic and Benzylic Alcohols Epoxidation of 1,1,2- Trisubstituted Alkenes Oxidation

  • f Primary

Alcohols Allylic Hydroxylation Glucuronidation of Primary and Secondary Aliphatic and Benzylic Alcohols

Oxidation

  • f Primary

Alcohols

Hydroxylation of Unfunctionalised Alicyclic Methylene

Bio BioTransformer

Uni niversity ty of

  • f Albert

rta

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SLIDE 13

8 days on AIN-93 diet wash-out period 2 male, wistar rats 2 female, wistar rats

Urine sampling start

5 days on AIN-93 supplemented with 0,05% terpenes (15mg /day) 2 male, wistar rats 2 female, wistar rats

Urine sampling

5 cycles – same rats were exposed to different food compounds

in in viv ivo experiment

feeding rats isolated monoterpenes and collecting metabolites-rich urine

3

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SLIDE 14

PhytoHub 2 PhytoHub 1 PhytoHub 3 PhytoHub 4

356,111 340,116 194,058 194,058 178,063 166,099 164,084 148,089

Analysis is

non-targeted LC-MS analysis in search of predicted metabolites

4

? ? ? ? ? ? ? ? ? ? ? ? ? ?

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SLIDE 15

Known metabolites Predicted metabolites Experimental data on rat metabolites

Investigation of Metabolism of Dietary Terpenoids

Literature & Databases

Validation of the predictions Identification of new metabolites

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SLIDE 16

Example:

1,8-cineole

The structures in the chromatogram were not yet confirmed. They have the same mass as the assigned peaks and are therefore used as examples. There are other structures predicted with same molecular mass.

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SLIDE 17

Example:

The structures in the chromatogram were not yet confirmed. They have the same mass as the assigned peaks and are therefore used as examples. There are other structures predicted with same molecular mass.

citral

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SLIDE 18

Conclusions

 Considering the selected 22 biotransformations, more than 1500 metabolites were predicted from the 23 tested terpenoids.  The predicted metabolites were helpful for the annotation of the peaks detected after the rats were exposed to the terpenoids.  Next step is to validate the hypothetical structures of known and new metabolites using qToF MS/MS.  The knowledge generated is being used to improve in silico prediction tools (BioTransformer)  The generated data will be made available in food compounds databases (PhytoHub, HMDB)

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SLIDE 19
  • Clau

laudine Manach

  • Celine Dalle
  • Marie-Anne Verny
  • Stephanie Durand
  • Delphine Centero
  • Charlotte Joly
  • Estelle Pujos
  • Bernard Lyan

Ackn knowledgements and and fin inancial support

  • David Wishart, University of Alberta
  • Yannick Djoumbou Feunang, University of Alberta
  • David Wishart
  • Yannick Djoumbou Feunang