I OI T- -HCM System and HCM System and I OI T Grid Activities in Vietnam Grid Activities in Vietnam Tran Van Lang, Do Van Long, Dao Van Tuyet Tuyet Tran Van Lang, Do Van Long, Dao Van { tvlang { tvlang, , dovanlong dovanlong, , tuyetdv} @vast tuyetdv} @vast- -hcm.ac.vn hcm.ac.vn Members of VNGrid VNGrid Members of Ho Chi Minh Minh City I nstitute of I nformation Technology (I OI T City I nstitute of I nformation Technology (I OI T- -HCM), HCM), Ho Chi Vietnamese Academy of Science & Technology Vietnamese Academy of Science & Technology April 10, 2008 April 10, 2008 I SGC 2008, Taipei I SGC 2008, Taipei
Content Content � Introduction Introduction � � IOIT IOIT- -HCM Grid HCM Grid � � Design Grid on VINAREN Network Design Grid on VINAREN Network � � Grid Collaboration: now and future Grid Collaboration: now and future � � Conclusion Conclusion �
INTRODUCTION INTRODUCTION HO CHI MI NH CI TY I NSTI TUTE OF I NFORMATI ON TECHNOLOGY Belong to VI ETNAMESE ACADEMY OF SCI ENCE & TECHNOLOGY (VAST) Website: http://www.ioit Website: http://www.ioit- -hcm.ac.vn hcm.ac.vn • • Email: pvcntt@hcmc.netnam.vn pvcntt@hcmc.netnam.vn Email: • • DIRECTOR: Prof. TRAN VAN LANG
IOIT- -HCM Grid HCM Grid IOIT � From 01/2004: Research Grid Infrastructure From 01/2004: Research Grid Infrastructure � � From 09/2004: Grid for Science applications: From 09/2004: Grid for Science applications: � Bioinformatics, Access Grid, e- -Health Health Bioinformatics, Access Grid, e � From 03/2006: Connected to FRAGMA From 03/2006: Connected to FRAGMA � � From 11/2007: Connected to ASGC From 11/2007: Connected to ASGC �
I OI T- -HCM Grid Team Members HCM Grid Team Members I OI T
Infrastructure of IOIT- -HCM Grid System for Research HCM Grid System for Research Infrastructure of IOIT PHÂN VI Ệ PHÂN VI Ệ N CÔNG NGH N CÔNG NGH Ệ Ệ THÔNG TIN T Ạ I TP. H Ồ Ồ CH CHÍ Í THÔNG TIN T Ạ I TP. H MINH (IOIT- -HCM) HCM) 6 MINH (IOIT 6
Configuration of I OI T- -HCM Grid Site HCM Grid Site Configuration of I OI T with GLite GLite with voms.grid.sinica.edu.tw wn1.ioit-hcm.vngrid.org wn2.ioit-hcm.vngrid.org ce.ioit-hcm.vngrid.org Internet se.ioit-hcm.vngrid.org lfc.ioit-hcm.vngrid.org ui.ioit-hcm.vngrid.org
Grid for e- -Science applications Science applications Grid for e � Bioinformatics Bioinformatics � � Access Grid Access Grid � � e e- -Health, telemedicine Health, telemedicine �
Research for Bioscience on Grid Research for Bioscience on Grid
Generating the Phylogenetic Phylogenetic Generating the Research Protein structure Research Protein structure tree on IOIT- -HCM Grid HCM Grid tree on IOIT Prediction on IOIT- -HCM Grid HCM Grid Prediction on IOIT The objective of this function is to docking and Molecular Dynamics simulations, which usually take a very long time to complete the analysis
Research for Access Grid Research for Access Grid � Access Grid for Access Grid for � collaboration and collaboration and Video Conferencing Video Conferencing IOIT- IOIT -HCM supported HCM supported the Conference on IT the Conference on IT and Communication in and Communication in Haiphong Province, Province, Haiphong Vietnam (10/2005) Vietnam (10/2005)
Meeting Room 3 Meeting Room 1 2 nd Floor – Block 2 2 nd Floor – Block 1 Center Room Meeting Room 2 1 st Floor – Block 1 1 st Floor – Block 2
Research for e- -Health, telemedicine Health, telemedicine Research for e Telemedicine between Nhi Nhi Dong 1 Hospital (Ho Chi Dong 1 Hospital (Ho Chi Minh Minh City, Vietnam) City, Vietnam) Telemedicine between and Nguyen Dinh Dinh Chieu Chieu (Ben (Ben Tre Tre Province, Vietnam) Province, Vietnam) and Nguyen Deploying Telemedicine with Video Conferencing Technology from IOIT OIT- -HCM HCM Deploying Telemedicine with Video Conferencing Technology from I
A telemedicine platform for information and image management on the grid IOIT- -HCM collaborate with CNRS, France HCM collaborate with CNRS, France IOIT
Connected to KI STI , PRAGMA and VAST Connected to KI STI , PRAGMA and VAST using Globus Globus Toolkit 4 Toolkit 4 using PHÂN VI Ệ PHÂN VI Ệ N CÔNG NGH N CÔNG NGH Ệ Ệ THÔNG TIN T Ạ I TP. H Ồ Ồ CH CHÍ Í THÔNG TIN T Ạ I TP. H MINH (IOIT- -HCM) HCM) 18 MINH (IOIT 18
I OI T- -HCM connected to HCM connected to Pragma Pragma I OI T
PHÂN VI Ệ PHÂN VI Ệ N CÔNG NGH N CÔNG NGH Ệ Ệ THÔNG TIN T Ạ I TP. H Ồ Ồ CH CHÍ Í THÔNG TIN T Ạ I TP. H MINH (IOIT- -HCM) HCM) 20 MINH (IOIT 20
Applications and Middleware Applications and Middleware in Pragma Pragma testbed testbed in http://goc.pragma- http://goc.pragma -grid.net/applications/default.html grid.net/applications/default.html Real science applications pair and drive middleware Real science applications pair and drive middleware � � development development Achieve long Achieve long- -run and scientific results run and scientific results � � Open to applications of all scientific disciplines Open to applications of all scientific disciplines � � Climate simulation Climate simulation � � Savannah/Nimrod (MU, Australia) Savannah/Nimrod (MU, Australia) � � MM5/Mpich- -Gx (CICESE, Mexico; KISTI, Korea) Gx (CICESE, Mexico; KISTI, Korea) MM5/Mpich � � Quantum- -mechanics, quantum mechanics, quantum- -chemistry: chemistry: Quantum � � TDDFT, QM TDDFT, QM- -MD, FMO/ MD, FMO/ Ninf Ninf- -G (AIST, Japan) G (AIST, Japan) � � Genomics Genomics � � iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, (UCSD, USA; AIST, Japan; JLU, iGAP/Gfarm/CSF � � China) China) HPM: genomics (I OI T HPM: genomics (I OI T- -HCM, Vietnam) HCM, Vietnam) � � mpiBlast/Mpich- -G2 (ASGC, Taiwan) G2 (ASGC, Taiwan) mpiBlast/Mpich � � Organic chemistry Organic chemistry � � Gamess Gamess- -APBS/Nimrod ( APBS/Nimrod (UZurich UZurich, Switzerland) , Switzerland) � � Molecular simulation Molecular simulation � � Siesta/Nimrod (UZurich UZurich, Switzerland; MU, , Switzerland; MU, Siesta/Nimrod ( � � Australia) Australia) Amber/ Rsh Rsh ( USM, Malaysia) ( USM, Malaysia) Amber/ � � Computer Science Computer Science � � Load Balancer (I OI T Load Balancer (I OI T- -HCM, Vietnam) HCM, Vietnam) � � GriddLeS GriddLeS (MU, Australia) (MU, Australia) � � 2 applications from Vietnam 2 applications from Vietnam 21 21
Connected to ASGC Connected to ASGC using Glite Glite Middleware Middleware using 22 22
Resource Broker model learning for I OI T- -HCM Grid HCM Grid Resource Broker model learning for I OI T LCG FileCatalogue FileCatalogue LCG “User User “ Input “sandbox” DataSets info (LFC) (LFC) interface” ” interface Information Information Output “sandbox” Service Service SE & CE info Resource Resource Input “sandbox” + Broker Info Broker Broker Output “sandbox” Job Submit Event Author. Job Status Job Query &Authen. Publish Storage Storage Element Element Logging & Logging & Computing Computing Job Status Book- Book -keeping keeping Element Element 23 23 Slide From EGEE Resource Broker Slide From EGEE Resource Broker
Blast job submission on I OI T-HCM Grid System with Glite Middleware JDL Files structure for job submission: [ Executable = "blastall"; JobType = "Normal"; Arguments = " -p blastp -d ecoli -i aa.129295"; StdOutput = "std_blast.out"; StdError = "std_blast.err"; InputSandbox = { "blastall", "ecoli.phr", "ecoli.pin", "ecoli.pnd", "ecoli.pni", "ecoli.psd", "ecoli.psi", "ecoli.psq", "aa.129295" } ; OutputSandbox = { "std_blast.out", "std_blast.err" } ]
Grid CA for VNGrid Grid CA for VNGrid • Became one of RAs (Registration Authority) in EGEE-TWGrid • About 100 CAs (Certification Authority) were issued for Vietnam
VNGrid Virtual Organization Virtual Organization VNGrid
Design Grid on VINAREN Network Design Grid on VINAREN Network Slide from VINAREN-TEIN2
voms.grid.sinica.edu.tw wn1.ioit-hcm.vngrid.org wn2.ioit-hcm.vngrid.org ce.ioit-hcm.vngrid.org Internet � Grid Domain: Grid Domain: se.ioit-hcm.vngrid.org lfc.ioit-hcm.vngrid.org ui.ioit-hcm.vngrid.org � vngrid.org vngrid.org � 5 main site on 5 main site on � VI NAREN: VI NAREN: 1. ioit ioit- -hcm.vngrid.org hcm.vngrid.org 1. 2. ioit.vngrid.org ioit.vngrid.org 2. 3. hut.vngrid.org hut.vngrid.org voms.grid.sinica.edu.tw wn1.ioit-hcm.vngrid.org wn2.ioit-hcm.vngrid.org ce.ioit-hcm.vngrid.org 3. 4. cnrs.vngrid.org cnrs.vngrid.org 4. Internet 5. vnu.vngird.org vnu.vngird.org se.ioit-hcm.vngrid.org lfc.ioit-hcm.vngrid.org ui.ioit-hcm.vngrid.org 5.
Test VC on VinaREN between: VNU, IOIT Ha Noi, IOIT-HCM on Oct/2007 Test VC on VinaREN between: VNU Ha Noi, HCMUS, Da Nang, IOIT-HCM on Mar/2008
Test VC on VinaREN between: Osaka University, I OI T-HCM on Mar/2008
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