Grid Computing for Health and the Grid Computing for Health and the Environment: Some Experiences and Environment: Some Experiences and Perspectives in the Philippines Perspectives in the Philippines
Ateneo de Manila University de Manila University Ateneo Located in Quezon Quezon Located in City, Metro Manila, City, Metro Manila, Philippines Philippines One of the oldest and One of the oldest and most established most established universities in the universities in the Philippines Philippines www.ateneo.edu www.ateneo.edu
Ateneo de Manila de Manila Ateneo University (AdMU AdMU) ) University ( Profile Profile The Ateneo Ateneo de Manila University de Manila University The (ADMU, http:// http://www.ateneo.edu www.ateneo.edu) is one of ) is one of (ADMU, the oldest and most established the oldest and most established universities in the Philippines. It has an universities in the Philippines. It has an excellent reputation in the sciences, excellent reputation in the sciences, humanities, social sciences and humanities, social sciences and management education. management education.
School of Science and School of Science and Engineering Engineering The School of Science and Engineering School of Science and Engineering The ( http:// http://www.ateneo.edu/sose www.ateneo.edu/sose) of the ) of the ( Ateneo de Manila de Manila University University aims to aims to Ateneo provide excellent training for students in provide excellent training for students in basic and applied disciplines basic and applied disciplines
School of Science and School of Science and Engineering Engineering Website: http://www.ateneo.edu/sose www.ateneo.edu/sose/ / Website: http:// Departments: Departments: Biology Biology Chemistry Chemistry Electronics, Computer, and Communications Engineering Electronics, Computer, and Communications Engineering Environmental Science Environmental Science Department of Information Systems and Computer Science Department of Information Systems and Computer Science Mathematics Mathematics Physics Physics Health Sciences Program Health Sciences Program Affiliated Units Affiliated Units – Medical City Medical City Hospital Hospital – – Ateneo Ateneo School of Medicine and Public Health School of Medicine and Public Health – – Manila Observatory (for environmental studies and monitoring) Manila Observatory (for environmental studies and monitoring) –
Previous and Current Projects Previous and Current Projects Grid and High- -Performance Computing Group Performance Computing Group Grid and High – 2000: AGILA: PC cluster for computational science 2000: AGILA: PC cluster for computational science – applications applications – 2001: 2001: Bayanihan Bayanihan Computing .NET: Grid Computing Computing .NET: Grid Computing – using XML Web Services using XML Web Services – 2003: 2003: MedGrid MedGrid: Grid computing for Medical : Grid computing for Medical – Applications (with AIST, Japan) Applications (with AIST, Japan) ( http:// http://www.medgrid.org www.medgrid.org ) ) ( – 2006: ONCO 2006: ONCO- -MEDIA Project ( MEDIA Project (http://www.onco http://www.onco- - – media.com) ) media.com – 2007: 2007: Psi Psi- -Grid Project (c/o ASTI Grid Project (c/o ASTI- -DOST) DOST) – – 2008: 2008: EUAsiaGrid EUAsiaGrid Project ( Project (http:// http://www.euasiagrid.org www.euasiagrid.org) ) –
Previous and Current Projects Previous and Current Projects Other Projects Other Projects – Test Test- -bed for PANDA Grid bed for PANDA Grid – – Environmental Modeling and Monitoring Environmental Modeling and Monitoring – (landslide dynamics, oil spill dynamics, (landslide dynamics, oil spill dynamics, rain monitoring for disaster management) rain monitoring for disaster management) – Computational chemistry and Computational chemistry and – bioinformatics bioinformatics – Breast Cancer (research collaboration Breast Cancer (research collaboration – with Philippines, Singapore, and France) with Philippines, Singapore, and France)
Bayanihan Computing .NET Computing .NET Bayanihan One of the first to demonstrate One of the first to demonstrate grid computing using XML Web grid computing using XML Web services (2001) services (2001) – won Microsoft .NET competition won Microsoft .NET competition – in 2002 in 2002 “Computational Web Service “ Computational Web Service” ” – – provides clean, web provides clean, web- -service service- - based interface to remote based interface to remote computational resources computational resources – – makes grids easier to setup and makes grids easier to setup and make available (no firewall make available (no firewall problems) problems) – makes client programming makes client programming – (including user- (including user -interface) much interface) much easier easier
MedGrid Project (2003) Project (2003) MedGrid Computational grid Computational grid testbed consisting of consisting of testbed several MRI acquisitional several MRI acquisitional systems, data servers, systems, data servers, analysis servers, and analysis servers, and their interconnection via their interconnection via the Internet the Internet – used for the real used for the real- -time time – analysis of fMRI fMRI data data analysis of Ateneo houses a cluster houses a cluster Ateneo – 9 dual – 9 dual- -proc Xeon (??? MHz) proc Xeon (??? MHz) with Myrinet with Myrinet switch switch
MedGrid Computational Web Computational Web MedGrid Service Demo Service Demo
MEDGRID Cluster MEDGRID Cluster (visitors from GEOGrid GEOGrid Project) Project) (visitors from
ONCO- -MEDIA MEDIA ONCO ONCO- -MEDIA Project MEDIA Project ONCO (www.onco www.onco- -media.com media.com) ) ( = ON ON tology tology and and CO CO ntext ntext Related Related ME ME dical dical I I mage mage = D istributed istributed A A ccess ccess D = An international collaboration between France, = An international collaboration between France, Switzerland and Asia (Singapore, China, Taiwan, Switzerland and Asia (Singapore, China, Taiwan, Japan, Philippines) Japan, Philippines) = Funded under the ICT- -Asia Program of the Asia Program of the = Funded under the ICT French Government French Government
ONCO- -MEDIA Project MEDIA Project ONCO www.onco- -media.com media.com www.onco Partners: Partners: 1. Image Processing Applications Laboratory (IPAL), Singapore 2. National Taiwan University, Taipei, Taiwan 3. Institute of Automation (CASIA), The Chinese Academy of Sciences, China 4. Ateneo de Manila University, Philippines 5. National Institute of Geriatrics and Gerontology, Department of Gerontechnology, Functional Brain Imaging Laboratory, Japan 6. Research and Applications Center in Image and Signal Processing— Medical Image (CREATIS), France 7. University Hospitals of Geneva Medical Informatics Service (UNIGE), Switzerland 8. Lyon Research Center for Images and Intelligent Information Systems (LIRIS), France 9. Laboratory of Computer Sciences (LIP6), France
ONCO- -MEDIA Project MEDIA Project ONCO Goal of ONCO- -MEDIA MEDIA : : Goal of ONCO To develop new representations and algorithms in the following areas: reas: To develop new representations and algorithms in the following a Semantic indexing of medical cases (images and reports) using Semantic indexing of medical cases (images and reports) using medical ontology; medical ontology; Contextual information retrieval, navigation, and quey Contextual information retrieval, navigation, and quey; ; Visual feature discovery and collaborative annotation; Visual feature discovery and collaborative annotation; Invariant image feature extraction and image intelligent Invariant image feature extraction and image intelligent matching/fusion matching/fusion Grid distributed medical image retrieval specification and Grid distributed medical image retrieval specification and prototyping prototyping
Recent Projects: Recent Projects: (ICT For Health) (ICT For Health) Image Segmentation of Digital Mammograms Image Segmentation of Digital Mammograms using the Watershed Algorithm for Breast using the Watershed Algorithm for Breast Cancer Detection Cancer Detection Computer- -aided Retrieval of Knee Meniscus aided Retrieval of Knee Meniscus Computer Magnetic Resonance Images Using Latent Magnetic Resonance Images Using Latent Semantic Indexing Semantic Indexing A Web- -Based Query and Retrieval System of Based Query and Retrieval System of A Web Federated DICOM Image Archives Federated DICOM Image Archives Breast Cancer Research (Philippines, Singapore, Breast Cancer Research (Philippines, Singapore, France) France)
Mammograms and Breast Mammograms and Breast Cancer Research Cancer Research
Recent Projects: Recent Projects: (ICT for the Environment (ICT for the Environment Landslide Dynamics Oil Spill Dynamics Rain Monitoring for Disaster Management
Oil Spill (Coastal Pollution) Oil Spill (Coastal Pollution)
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