Grid Computing for Health and the Grid Computing for Health and the - - PowerPoint PPT Presentation

Grid Computing for Health and the Grid Computing for Health and the Environment: Some Experiences and Environment: Some Experiences and Perspectives in the Philippines Perspectives in the Philippines

Ateneo Ateneo de Manila University de Manila University

Located in Located in Quezon Quezon City, Metro Manila, City, Metro Manila, Philippines Philippines One of the oldest and One of the oldest and most established most established universities in the universities in the Philippines Philippines www.ateneo.edu www.ateneo.edu

Ateneo Ateneo de Manila de Manila University ( University (AdMU AdMU) )

Profile Profile The The Ateneo Ateneo de Manila University de Manila University (ADMU, (ADMU, http:// http://www.ateneo.edu www.ateneo.edu) is one of ) is one of the oldest and most established the oldest and most established universities in the Philippines. It has an universities in the Philippines. It has an excellent reputation in the sciences, excellent reputation in the sciences, humanities, social sciences and humanities, social sciences and management education. management education.

School of Science and School of Science and Engineering Engineering

The The School of Science and Engineering School of Science and Engineering ( ( http:// http://www.ateneo.edu/sose www.ateneo.edu/sose) of the ) of the Ateneo Ateneo de Manila de Manila University University aims to aims to provide excellent training for students in provide excellent training for students in basic and applied disciplines basic and applied disciplines

School of Science and School of Science and Engineering Engineering

Website: http:// Website: http://www.ateneo.edu/sose www.ateneo.edu/sose/ / Departments: Departments:

Biology Biology Chemistry Chemistry Electronics, Computer, and Communications Engineering Electronics, Computer, and Communications Engineering Environmental Science Environmental Science Department of Information Systems and Computer Science Department of Information Systems and Computer Science Mathematics Mathematics Physics Physics Health Sciences Program Health Sciences Program Affiliated Units Affiliated Units

– – Medical City Medical City Hospital Hospital – – Ateneo Ateneo School of Medicine and Public Health School of Medicine and Public Health – – Manila Observatory (for environmental studies and monitoring) Manila Observatory (for environmental studies and monitoring)

Previous and Current Projects Previous and Current Projects

Grid and High Grid and High-

• Performance Computing Group

Performance Computing Group – – 2000: AGILA: PC cluster for computational science 2000: AGILA: PC cluster for computational science applications applications – – 2001: 2001: Bayanihan Bayanihan Computing .NET: Grid Computing Computing .NET: Grid Computing using XML Web Services using XML Web Services – – 2003: 2003: MedGrid MedGrid: Grid computing for Medical : Grid computing for Medical Applications (with AIST, Japan) Applications (with AIST, Japan) ( ( http:// http://www.medgrid.org www.medgrid.org ) ) – – 2006: ONCO 2006: ONCO-

• MEDIA Project (

MEDIA Project (http://www.onco http://www.onco-

• media.com

media.com) ) – – 2007: 2007: Psi Psi-

• Grid Project (c/o ASTI

Grid Project (c/o ASTI-

• DOST)

DOST) – – 2008: 2008: EUAsiaGrid EUAsiaGrid Project ( Project (http:// http://www.euasiagrid.org www.euasiagrid.org) )

Previous and Current Projects Previous and Current Projects

Other Projects Other Projects – – Test Test-

• bed for PANDA Grid

bed for PANDA Grid – – Environmental Modeling and Monitoring Environmental Modeling and Monitoring (landslide dynamics, oil spill dynamics, (landslide dynamics, oil spill dynamics, rain monitoring for disaster management) rain monitoring for disaster management) – – Computational chemistry and Computational chemistry and bioinformatics bioinformatics – – Breast Cancer (research collaboration Breast Cancer (research collaboration with Philippines, Singapore, and France) with Philippines, Singapore, and France)

Bayanihan Bayanihan Computing .NET Computing .NET

One of the first to demonstrate One of the first to demonstrate grid computing using XML Web grid computing using XML Web services (2001) services (2001)

– – won Microsoft .NET competition won Microsoft .NET competition in 2002 in 2002

“ “Computational Web Service Computational Web Service” ”

– – provides clean, web provides clean, web-

• service

service-

• based interface to remote

based interface to remote computational resources computational resources – – makes grids easier to setup and makes grids easier to setup and make available (no firewall make available (no firewall problems) problems) – – makes client programming makes client programming (including user (including user-

• interface) much

interface) much easier easier

MedGrid MedGrid Project (2003) Project (2003)

Computational grid Computational grid testbed testbed consisting of consisting of several MRI several MRI acquisitional acquisitional systems, data servers, systems, data servers, analysis servers, and analysis servers, and their interconnection via their interconnection via the Internet the Internet

– – used for the real used for the real-

• time

time analysis of analysis of fMRI fMRI data data

Ateneo Ateneo houses a cluster houses a cluster

– – 9 dual 9 dual-

• proc Xeon (??? MHz)

proc Xeon (??? MHz) with with Myrinet Myrinet switch switch

MedGrid MedGrid Computational Web Computational Web Service Demo Service Demo

MEDGRID Cluster MEDGRID Cluster

(visitors from (visitors from GEOGrid GEOGrid Project) Project)

ONCO ONCO-

• MEDIA

MEDIA

ONCO ONCO-

• MEDIA Project

MEDIA Project ( (www.onco www.onco-

• media.com

media.com) ) = = ON ONtology tology and and CO COntext ntext Related Related ME MEdical dical I Image mage D Distributed istributed A Access ccess = An international collaboration between France, = An international collaboration between France, Switzerland and Asia (Singapore, China, Taiwan, Switzerland and Asia (Singapore, China, Taiwan, Japan, Philippines) Japan, Philippines) = Funded under the ICT = Funded under the ICT-

• Asia Program of the

Asia Program of the French Government French Government

ONCO ONCO-

• MEDIA Project

MEDIA Project

www.onco www.onco-

• media.com

media.com Partners: Partners:

1. Image Processing Applications Laboratory (IPAL), Singapore 2. National Taiwan University, Taipei, Taiwan 3. Institute of Automation (CASIA), The Chinese Academy of Sciences, China 4. Ateneo de Manila University, Philippines

• 5. National Institute of Geriatrics and Gerontology, Department of

Gerontechnology, Functional Brain Imaging Laboratory, Japan

• 6. Research and Applications Center in Image and Signal Processing—

Medical Image (CREATIS), France

• 7. University Hospitals of Geneva Medical Informatics Service (UNIGE),

Switzerland

• 8. Lyon Research Center for Images and Intelligent Information Systems

(LIRIS), France 9. Laboratory of Computer Sciences (LIP6), France

ONCO ONCO-

• MEDIA Project

MEDIA Project

Goal of ONCO Goal of ONCO-

• MEDIA

MEDIA: : To develop new representations and algorithms in the following a To develop new representations and algorithms in the following areas: reas: Semantic indexing of medical cases (images and reports) using Semantic indexing of medical cases (images and reports) using medical ontology; medical ontology; Contextual information retrieval, navigation, and Contextual information retrieval, navigation, and quey quey; ; Visual feature discovery and collaborative annotation; Visual feature discovery and collaborative annotation; Invariant image feature extraction and image intelligent Invariant image feature extraction and image intelligent matching/fusion matching/fusion Grid distributed medical image retrieval specification and Grid distributed medical image retrieval specification and prototyping prototyping

Recent Projects: Recent Projects: (ICT For Health) (ICT For Health)

Image Segmentation of Digital Mammograms Image Segmentation of Digital Mammograms using the Watershed Algorithm for Breast using the Watershed Algorithm for Breast Cancer Detection Cancer Detection Computer Computer-

• aided Retrieval of Knee Meniscus

aided Retrieval of Knee Meniscus Magnetic Resonance Images Using Latent Magnetic Resonance Images Using Latent Semantic Indexing Semantic Indexing A Web A Web-

• Based Query and Retrieval System of

Based Query and Retrieval System of Federated DICOM Image Archives Federated DICOM Image Archives Breast Cancer Research (Philippines, Singapore, Breast Cancer Research (Philippines, Singapore, France) France)

Mammograms and Breast Mammograms and Breast Cancer Research Cancer Research

Recent Projects: Recent Projects: (ICT for the Environment (ICT for the Environment

Landslide Dynamics Oil Spill Dynamics Rain Monitoring for Disaster Management

Oil Spill (Coastal Pollution) Oil Spill (Coastal Pollution)

Emergency sensing network WR BS BS BS

BS

Monitoring Network Tipping bucket Power monitor Wireless-enabled sensors

Acoustic Sensors RF Power Monitor

World’s First National Wireless Rain Measurement System ADMU - Smart - MO- JRC Disaster Alert System

cellphone

Microwave Link Power Loss ==> Rain Rate

Real-time acoustic rain sensing

network performance monitoring landslide, flooding alert system international programs and teaming

Ground sensors

Other Recent Activities Other Recent Activities

ICT4Health 2008: ICT4Health 2008: International Symposium International Symposium

• n ICT For Health, Feb.
• n ICT For Health, Feb.

29 29 – – Mar. 1, 2008,

• Mar. 1, 2008,

Ateneo Ateneo de Manila de Manila University (with a University (with a workshop on Grid workshop on Grid Computing Applications). Computing Applications). Funded by the Embassy Funded by the Embassy

• f France to the
• f France to the

Philippines. Philippines.

EUAsiaGrid EUAsiaGrid Project Project

Starts in April 2008, a two year project Starts in April 2008, a two year project\ \ An EU (FP7) funded project in An EU (FP7) funded project in collaboration with 14 other institutions in collaboration with 14 other institutions in Europe and Asia Europe and Asia Ateneo Ateneo de Manila University is involved in de Manila University is involved in Grid Applications and Grid Training Grid Applications and Grid Training packages packages

ACKNOWLEDGMENT ACKNOWLEDGMENT

THANK YOU. THANK YOU.

• EUAsiaGrid

EUAsiaGrid Project Project

• ONCO

ONCO-

• MEDIA Project

MEDIA Project

• Academia

Academia Sinica Sinica Grid Computing Grid Computing Center Center

• Ateneo

Ateneo de Manila University (PH) de Manila University (PH)