From reproducibility to interactivity: to @minebocek - - PowerPoint PPT Presentation

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From reproducibility to interactivity: to @minebocek - - PowerPoint PPT Presentation

Apr 30, 2023 105 likes •328 views

From reproducibility to interactivity: to @minebocek mine-cetinkaya-rundel Mine etinkaya-Rundel cetinkaya.mine@gmail.com 70 more than percent have tried and failed to reproduce another scientist's experiments Baker, Monya. "1,500

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SLIDE 1 mine-cetinkaya-rundel cetinkaya.mine@gmail.com @minebocek Mine Çetinkaya-Rundel

From reproducibility to interactivity: to

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SLIDE 2

70

have tried and failed to reproduce another scientist's experiments more than percent Baker, Monya. "1,500 scientists lifu the lid on reproducibility." Nature News 533.7604 (2016): 452.
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SLIDE 3

50

have tried and failed to reproduce their own experiments more than percent Baker, Monya. "1,500 scientists lifu the lid on reproducibility." Nature News 533.7604 (2016): 452.
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SLIDE 4

940

results containing the term reproducibility crisis just in 2019 Baker, Monya. "1,500 scientists lifu the lid on reproducibility." Nature News 533.7604 (2016): 452. Google Scholar yields
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SLIDE 5

R Markdown

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SLIDE 6 > 01-interactivity-in-r/01-rmd.Rmd
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SLIDE 7

R Markdown + parameters

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SLIDE 8 > 01-interactivity-in-r/02-rmd-with-parameters.Rmd
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SLIDE 9

R Markdown + htmlwidgets

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SLIDE 10 > 01-interactivity-in-r/03-rmd-with-htmlwidget.Rmd
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SLIDE 11

R Markdown + Shiny

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SLIDE 12 > 01-interactivity-in-r/04-rmd-with-shiny.Rmd
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SLIDE 13

Flexdashboard + Shiny

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SLIDE 14 > 01-interactivity-in-r/05-rmd-dashboard-with-shiny.Rmd
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SLIDE 15

Ladder of interactivity

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SLIDE 16 More interactive .Rmd Shiny app .Rmd with parameters .Rmd with htmlwidgets .Rmd with Shiny components
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SLIDE 17 More Complicated .Rmd .Rmd with parameters .Rmd with htmlwidgets .Rmd with Shiny components Shiny app More interactive
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SLIDE 18 .Rmd .Rmd with parameters .Rmd with htmlwidgets .Rmd with Shiny components Shiny app Change the data more than once per session?
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SLIDE 19 .Rmd .Rmd with parameters .Rmd with htmlwidgets .Rmd with Shiny components Shiny app Need more than a document or dashboard?
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Your turn

  • Open 01-reproducible-to-interactive/06-shiny-to-param-
rmd.R, run the app, observe its functionality.
  • Now open 01-reproducible-to-interactive/07-shiny-to-param-
rmd.Rmd and fill in the blanks to convert the app to a parametrised R Markdown document.
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Solution

Solution to the previous exercise > 01-reproducible-to-interactive/08-shiny-to-param-rmd.Rmd