Bio-tools for the Future International 2-year Bioinformatics - - PowerPoint PPT Presentation

• Bio-tools for the Future

International 2-year Bioinformatics Master’s Programme

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Two MSC Internships:

• Major (36 – 42 ECTS)
• Minor (18 – 24 ECTS)
• Extra 6 ECTS for scientific report writing and giving

end seminars for both the major and minor projects

• projects

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Colloquium series and writing research proposal (6 ects)

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• 1. Most courses are organised on a half-time basis as

they typically take two months for 6 ects.

• 2. Courses do not involve many fixed contact hours:

typically two 2-hour lectures per week

• 3. Courses involve assignments, varying from question

sheets to scientific mini-projects, that you will need to report on. We have an open door policy in the

• report on. We have an open door policy in the

bioinformatics group for this, and we expect you to come to us with all your queries (private tuition).

• 4. Together this means there is a lot of flexibility for you

to arrange your bioinformatics master’s.

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7 7 7 7 Our MSc Bioinformatics students have visited:

• Other Dutch Centres:

CMBI, UMC, UvA, MRC-Holland

• Foreign Centres:

Sloan Kettering Foundation NYC,

• Oakland, NZ

Stockholm Bioinformatics Centre INRIA Strasbourg RIKEN Tokyo, Japan

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• A single area of deficiency (e.g. programming) can be
• A single area of deficiency (e.g. programming) can be

brought up to scratch during the master by attending courses such as:

• Course ‘Inleiding programmeren’
• Course Molecular Biology and Genetics

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• – Molecular Biology

– Pharmacology (drug design) – Agriculture – Biotechnology – Clinical medicine

• – Clinical medicine

– Anthropology – Forensic science – Chemical industries (detergent industries, etc.) Excellent job opportunities

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• The Centre for Integrative

Bioinformatics (IBIVU)

Faculty of Sciences Faculteit of Earth and Life Sciences

• Faculteit of Earth and Life Sciences

VU Medical Centre (VUMC)

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Partners at VU:

Institute for Molecular Cell Biology (Systems Biology) Center for Neurogenomics and Cognitive Research Center for research on Biocomplex Systems

• Center for research on Biocomplex Systems

VUMC Oncoproteomics Laboratory VUMC Microarray Core Facility

Partners in large (inter)national projects:

Centre for Medical Systems Biology Ecogenomics Netherlands Bioinformatics Centre

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• Netherlands Bioinformatics Centre

EU Network of Excellence “ENFIN”

• Interdisciplinary
• Core Bioinformatics group (enabling

technologies/Tools directed)

• Systems Biology/Genomics/Neurobiology

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• Systems Biology/Genomics/Neurobiology
• Mathematics/Computer Science

Some of our research projects:

• Multiple sequence alignment of TM proteins
• Protein-Protein interaction prediction
• Protein function discriminating site prediction

(Sequence Harmony, Multi-RELIEF)

• Fluxomics
• Evolutionary fuzzy clustering of aCGH and Ecogenomics

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• Evolutionary fuzzy clustering of aCGH and Ecogenomics

data

• Analysis of proteomics mass spectrometry data
• RNA evolutionary analysis and structure prediction
• Systems Biology of Altzheimer’s disease
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Mathematics Statistics Biology Molecular biology Chemistry

Bioinformatics

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Science Informatics Medicine Physics

Bioinformatics

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• “The big bang” -- 26 June 2000 – announcing

the human genome

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This is a microarray measuring the expression of many genes in one experiment

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TERTIARY STRUCTURE (fold)

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