SLIDE 6 Simulation Dataset each entry √mXij ∼ N(0, 1) supp(w ∗) is generated by random walk Entries of w ∗ from N(0, 1) Weighted Graph Model (Hegde et al., 2015b)
5 10 15 20 25 Epoch 100 10−2 10−4 10−6 10−8 x − ˆ x
GraphStoIHT
b = 1 b = 2 b = 4 b = 8 b = 16 b = 24 b = 32 b = 40 b = 48 b = 56 b = 64 b = 180 300 600 900 Iteration 100 10−2 10−4 10−6 10−8
GraphStoIHT
η = 0.1 η = 0.2 η = 0.3 η = 0.4 η = 0.5 η = 0.6 η = 0.7 η = 0.8 η = 0.9 η = 1.0 η = 1.1 η = 1.2 η = 1.3 η = 1.4 η = 1.5 η = 1.6
BackGround Angio Text
1.5 2.0 2.5 3.0 3.5 Oversampling ratio m/s 0.0 0.2 0.4 0.6 0.8 1.0 Probability of Recovery 1.5 2.0 2.5 3.0 3.5 Oversampling ratio m/s 1.5 2.0 2.5 3.0 3.5 Oversampling ratio m/s
NIHT IHT StoIHT CoSaMP GraphIHT GraphCoSaMP GraphStoIHT
Breast Cancer Dataset 295 samples with 78 positives (metastatic) and 217 negatives (non-metastatic) provided in (Van De Vijver et al., 2002). PPI network with 637 pathways is provided in (Jacob et al., 2009). We restrict our analysis on 3,243 genes (nodes) with 19,938
- edges. These cancer-related genes form a
connected subgraph.
Algorithm Cancer related genes wt0 AUC GraphStoIHT BRCA2, CCND2, CDKN1A, ATM, AR, TOP2A 051.7 0.715 GraphIHT ATM, CDKN1A, BRCA2, AR, TOP2A 055.2 0.714 ℓ1-Path BRCA1, CDKN1A, ATM, DSC2 061.2 0.675 StoIHT MKI67, NAT1, AR, TOP2A 059.6 0.708 ℓ1/ℓ2-Edge CCND3, ATM, CDH3 051.4 0.705 ℓ1-Edge CCND3, AR, CDH3 039.9 0.698 ℓ1/ℓ2-Path BRCA1, CDKN1A 147.6 0.705 IHT NAT1, TOP2A 067.9 0.707 6 / 7
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