Software tools for iGEMers: BioBrick / Past Project Search & - - PowerPoint PPT Presentation

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Software tools for iGEMers: BioBrick / Past Project Search & - - PowerPoint PPT Presentation

May 19, 2023 452 likes •764 views

Software tools for iGEMers: BioBrick / Past Project Search & Tutorials Background In iGEM... Important part is: Think & decide your project iGEM Start to Finish Background Lots of time is spent on fi nding information required

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Software tools for iGEMers: BioBrick / Past Project Search & Tutorials

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Background

In iGEM... Important part is: “Think & decide your project” iGEM Start to Finish

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Background

Lots of time is spent on finding information required for “Think & decide your project” part Such as ...

  • Learning about essential iGEM concepts
  • Searching past projects relevant to yours
  • Deciding what BioBrick parts to use
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Our Software - More efficiency!

  • Learning about essential iGEM concepts
  • Search past projects relevant to yours
  • Decide what BioBrick parts to use

➡ Tutorials … Obtain knowledge easily! ➡ New Search System … Save your time & labor! ➡ Web base … Easy & speedy to use!

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Our Software

  • Tutorial
  • Search

BioBrick Puzzle Gene Network Game Past Project Search BioBrick Search

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Our Software

  • Tutorial
  • Search

BioBrick Puzzle Gene Network Game Past Project Search BioBrick Search

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Tutorial - Concept

  • Target
  • iGEM beginners
  • Subject
  • BioBrick Standard Assembly
  • Dynamics of Genetic Network
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Tutorial - Background

  • Beginners
  • Many of iGEM participants are new-comers
  • Spend a lot of time learning about iGEM
  • BioBrick / Genetic Network
  • All teams must learn
  • No adequate educational materials
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Tutorial - Feature

  • Interactive … Learning efficiently
  • Game … Keeping users interested
  • Contents relevant to iGEM
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Let's watch the Video: BioBrick Puzzle & Gene Network game

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Tutorial - Conclusion

  • BioBrick Puzzle
  • Learn BioBrick Standard Assembly
  • Gene Network Game
  • Learn genetic networks
  • Understand & design constructs
  • Acquire basic skills to conduct modeling
  • Beginners can learn proper knowledge efficiently
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Our Software

  • Tutorial
  • Search

BioBrick Puzzle Gene Network Game Past Project Search BioBrick Search

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Our Software

  • Tutorial
  • Search

BioBrick Puzzle Gene Network Game Past Project Search BioBrick Search

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Past Project Search - Background

Past team information is scattered

  • Any of these pages do not contain enough information
  • These pages are divided by years
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Past Project Search - Features

  • Search across multiple years
  • Integration of scattered information
  • Title, Abstract, School info, Presentation materials ...
  • Filtering by
  • Track, Medal, Year, Award & Region
  • Simple & user-friendly interface
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Past Project Search - Conclusion

Improved the accessibility to past iGEM teams’ data

  • Across multiple years
  • Displayed all at once
  • Can be narrowed down as necessary

Likely to be useful for

  • iGEMers studying previous researches
  • Any people who interested in iGEM
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Our Software

  • Tutorial
  • Search

BioBrick Puzzle Gene Network Game Past Project Search BioBrick Search

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BioBrick Search - Introduction

BioBrick Search

  • is a novel BioBrick Search tool
  • provides more efficiency and reliability
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TOKYO

S O F T W A R E

BioBrick Search - Background

Conventional Search at partsregistry.org

  • Not very useful
  • Problems we spotted:
  • Results are not sorted by

reliability or relevance

  • Information given in the

result list is insufficient

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TOKYO

S O F T W A R E

BioBrick Search - Background

Conventional Search at partsregistry.org

  • Not very useful
  • Problems we spotted:
  • Results are not sorted by

reliability or relevance

  • Information given in the

result list is insufficient

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BioBrick Search - Video

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BioBrick Search - Video

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  • Publicly available since this August
  • Made a community post at iGEM official page
  • Accessed from 16 different countries
  • Received favorable responses
  • “We successfully found the appropriate parts from their

functions”

  • “We took into account the "reliability" score to determine

which BioBrick parts to use”

  • Made improvements based on feedbacks from users

BioBrick Search - Collaboration

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  • Publicly available since this August
  • Made a community post at iGEM official page
  • Accessed from 16 different countries
  • Received favorable responses
  • “We successfully found the appropriate parts from their

functions”

  • “We took into account the "reliability" score to determine

which BioBrick parts to use”

  • Made improvements based on feedbacks from users
  • Search history at the top of the page

BioBrick Search - Collaboration

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  • Publicly available since this August
  • Made a community post at iGEM official page
  • Accessed from 16 different countries
  • Received favorable responses
  • “We successfully found the appropriate parts from their

functions”

  • “We took into account the "reliability" score to determine

which BioBrick parts to use”

  • Made improvements based on feedbacks from users
  • Search history at the top of the page
  • Direct link to the partsregistry.org wiki page

BioBrick Search - Collaboration

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Our Software

  • Tutorial
  • Search

BioBrick Puzzle Gene Network Game Past Project Search BioBrick Search

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Attributions