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ANNOSYS2: REACHING OUT TO THE SEMANTIC WEB
Okka Tschöpe, Lutz Suhrbier, Anton Güntsch, Walter G. Berendsohn
REACHING OUT TO THE SEMANTIC WEB Okka Tschpe, Lutz Suhrbier, Anton - - PowerPoint PPT Presentation
REACHING OUT TO THE SEMANTIC WEB Okka Tschpe, Lutz Suhrbier, Anton - - PowerPoint PPT Presentation
ANNOSYS2: REACHING OUT TO THE SEMANTIC WEB Okka Tschpe, Lutz Suhrbier, Anton Gntsch, Walter G. Berendsohn Accessibility of Biodiversity data 2-3 billion specimens worldwide Traditional annotation workflow AnnoSys (1) annotation workflow
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2-3 billion specimens worldwide
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Traditional annotation workflow
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AnnoSys (1) annotation workflow
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Collaborating portals
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Web annotation data model
Handle RDF data
Integration with other RDF-based knowledge bases Extend semantic queries to annotated record data Facilitates data merging if underlying schemas differ Allows any kind of URI resolvable web resource to be used as target for an annotation
„Annotation“ Record element
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Web Annotation Implementation
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Motivation for AnnoSys2: extend AnnoSys to further data standards
Original Data
(XML/CSV (DwC- Archive)/JSON/RDF/…)
Matching rules
Import AnnoSys RDF- Record
RDF-Repository
W3C- WebAnnotation AnnoSys Ontology
DwC-RDF ABCD terms ABCD ontology
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User interface
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Model construction (Prototype)
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Annotation types
Skos:related Skos:related
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Mapping of AnnoSys Ontology concepts
Concept in AnnoSys
- ntology
Skos exact match Skos close match Narrow match Skos related Full scientific name Dwc:scientificNa me abcd2:TaxonIdentified- FullScientificNameStri ng Annotation type: Determination Scientific Name Authorship Dwc:scientificNa meAuthorship abcd2:TaxonIdentified- AuthorTeam abcd2:TaxonIdentified- AuthorTeamAndYear abcd2:TaxonIdentified- AuthorTeamOriginalAndYear Annotation type: Determination Scientific Name Authorship Parenthetical abcd2:TaxonIdentified- ParentheticalAuthorTeamAn dYear abcd2:TaxonIdentified- AuthorTeamParenthesis abcd2:TaxonIdentified- AuthorTeamParenthesisAnd Year Annotation type: Determination
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Evaluation
150 semantic-web compliant concepts related to nine annotation types
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Evaluation
150 semantic-web compliant concepts related to nine annotation types Annotated concepts stored together with corresponding record in same triple store More complex searches Improved performance
- f the system
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Outlook
AnnoSys2 release in 2018 Taxon-level data Image annotations Other workflows and
- ther domains.
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Take home message
Extensible and format-independent system for virtual annotation of specimen data "AnnoSys-Ontology" Annotations stored centrally in an RDF triple store following W3C Web Annotation Data Model
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Further Information
Visit Contact
https://annosys.bgbm.fu-berlin.de/ annosys@bgbm.org
AnnoSys2 test version
https://dev-annosys.bgbm.fu-berlin.de/AnnoSys/AnnoSys
Paper
Suhrbier,L., Kusber,W.-H., Tschöpe,O., A. Güntsch & Berendsohn, W. G. 2017: AnnoSys - implementation of a generic annotation system for schema-based data using the example
- f biodiversity collection data. Database 2017: article ID bax018;
doi:10.1093/database/bax018 Tschöpe, O., Macklin, J.A., Morris, R.A., Suhrbier, L. & Berendsohn, W.G. 2013: Annotating Biodiversity Data via the Internet. Taxon 62(6): 1248-1258. DOI: http://dx.doi.org/10.12705/626.4
User Guide
Tschöpe, O., Kusber, W.-H. & Suhrbier, L. 2015: AnnoSys User Guide. Botanic Garden and Botanical Museum Berlin-Dahlem (BGBM). Published on the Internet https://annosys.bgbm.org/sites/default/files/annosys-user-guide_v1-4_2015-06-30.pdf
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