Orthologs Number of orthologs in the different gene sets - - PowerPoint PPT Presentation

orthologs number of orthologs in the different gene sets
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Orthologs Number of orthologs in the different gene sets - - PowerPoint PPT Presentation

Orthologs Number of orthologs in the different gene sets Comparison: Our Eye regeneration development Data: Both up and High conservation of down-regulated upregulated genes genes are more compared to the conserved than other gene


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Orthologs

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Number of orthologs in the different gene sets

Our regeneration Data:

High conservation of upregulated genes compared to the

  • ther gene sets in

the early time points

Comparison: Eye development

Both up and down-regulated genes are more conserved than flat genes

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Chi square test

Our regeneration data Comparison: Eye development Baseline: flat genes Goal comparison to eye: we would like to find a negative control, however the eye development is conserved [1]. We were not able to find a negative control. [1] http://dx.doi.org/10.1016/S0960-9822(00)00821-6

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Mouse skin regeneration data

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Mouse skin regeneration data

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Mouse skin

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Mouse heart regeneration data

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Mouse heart regeneration data

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Mouse heart

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Zebrafish heart regeneration data

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Zebrafish heart regeneration data

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Fly gene stats Mouse gene stats Enrichment of regeneration genes shared by mouse and fly Mouse up-reg genes/all mouse protein-coding genes up-reg genes both fly and mouse/ fly up-reg genes up-reg genes both fly and mouse/ mouse up-reg genes

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Fly gene stats Mouse gene stats Enrichment of regeneration genes shared by mouse and fly Mouse up-reg genes/all mouse protein-coding genes up-reg genes both fly and mouse/ fly up-reg genes up-reg genes both fly and mouse/ mouse up-reg genes

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New data for re-usage analysis

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New data for re-usage analysis

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ENCODE data for re-usage analysis

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ENCODE data for re-usage analysis

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Genes in/out side clusters

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0h upregulated genes INSIDE clusters

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0h upregulated genes OUTSIDE clusters

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Orthologous genes in 0h upregulated clusters