SDH-deficient GIST 2019 Update Michael C. Heinrich, MD Professor - - PowerPoint PPT Presentation

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SDH-deficient GIST 2019 Update Michael C. Heinrich, MD Professor - - PowerPoint PPT Presentation

SDH-deficient GIST 2019 Update Michael C. Heinrich, MD Professor Department of Medicine Department of Cell, Developmental, and Cancer Biology Established 2008 The NIH pediatric and wild-type GIST clinic Bi-annual clinic at NIH


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SDH-deficient GIST 2019 Update

Michael C. Heinrich, MD Professor

Department of Medicine Department of Cell, Developmental, and Cancer Biology

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Established 2008

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The NIH pediatric and wild-type GIST clinic

  • Bi-annual clinic at NIH established June, 2008

– Collaborative effort between clinicians, researchers, support groups and patients – Objective: further the investigation of the clinical features and

  • ncogenic mechanisms underlying wild-type GIST

Surgical Management of Wild-type Gastrointestinal Stromal Tumors: A Report from the NIH Pediatric and Wild-type GIST Clinic; Weldon, CW et al; JCO epub (in press

Cancer Discovery 2013

JAMA Oncology 2016

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Comparison of Adult and Pediatric/AYA GIST

Adult Peds/AYA Primary tumor site Gastric 70% Gastric 90%+ Gender M>F (slight bias) Female predominance SDHB expression Retained Lost KIT mutations More than 70% Minority Multiple primary tumors Rare Common Due to inherited mutation Rare Majority (SDH) Response to imatinib Majority Uncommon Family inheritance Rare Majority

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KIT mutant 77.1% PDGFRA mutant 10.1% SDH deficient 10.0% BRAF mutant 1.5% RAS mutant 0.1% NF1-related 0.1% RTK translocation 0.1% Unclassifed 1.0%

Molecular Classification of GIST 2018

Note: This data are compiled from series largely composed of adult patients

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Matrix IMM

Succinate dehydrogenase

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TCA Cycle Q QH2 ETC

  • 4-subunit complex in

mitochondrial matrix

  • Links TCA to ETC
  • Cofactors:
  • FAD
  • 3 iron-sulfur clusters
  • Heme b
  • Assembly Factors
  • SDHAF1-4

Slide courtesy of Jason Kent

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SDH dysfunction and human disease

Slide courtesy of Jason Kent

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SDH dysfunction and human disease

  • Inactivation of any subunit

results in loss of SDHB and whole-complex activity

Slide courtesy of Jason Kent

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SDH dysfunction and human disease

  • Inactivation of any subunit

results in loss of SDHB and whole-complex activity

Slide courtesy of Jason Kent

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SDH dysfunction and human disease

  • Inactivation of any subunit

results in loss of SDHB and whole-complex activity

  • Loss of SDH activity results

in succinate accumulation

Slide courtesy of Jason Kent

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SDH dysfunction and human disease

  • Inactivation of any subunit

results in loss of SDHB and whole-complex activity

  • Loss of SDH activity results in

succinate accumulation

  • Elevated succinate inhibits ⍺-

ketoglutarate-dependent dioxygenases resulting in pathological phenotypes

Dioxygenase Example Consequence Hydroxylase HIF prolyl hydroxylase Pseudohypoxia Demethylase TET Hypermethylation

Image: Wikipedia

Slide courtesy of Jason Kent

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SDH-deficient GIST tumor are globally hypermethylated

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  • SDH-deficiency is associated with multiple human

diseases

– Cancer

  • Gastrointestinal stromal tumor (GIST)
  • Paraganglioma and pheochromocytoma (PGL/PCC)
  • Renal cell carcinoma (RCC)

– Leigh syndrome and other neurodegenerative disorders – Neonatal cardiomyopathy

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SDH dysfunction and human disease

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SDH-deficiency defined by loss of SDHB

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SDHB IHC - PGL/PCC tumor samples

SDH-Deficient SDH-Proficient

Adapted from van Nederveen, 2009

SDHB mutation SDHC mutation SDHD mutation VHL mutation RET mutation NF1 mutation

NEGATIVE POSITIVE

What causes SDH- deficiency in these tumors? Loss-of-function mutations in SDHx

Slide courtesy of Jason Kent

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SDH-deficiency defined by loss of SDHB

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SDHB IHC - PGL/PCC tumor samples

SDH-Deficient

SDHB mutation SDHC mutation SDHD mutation

What causes SDH- deficiency in these tumors? Loss-of-function mutations in SDHx

Adapted from Eveneopoel, 2014

NEGATIVE

Slide courtesy of Jason Kent

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Out of control automobile as a model of cancer

  • Car = cell
  • Car out of control = cancer cell
  • Jammed accelerator = oncogene (e.g. KIT mutation)

– Gain of function – Only need one event (mutation)

  • Defective brakes = tumor suppressor gene (e.g. SDH)

– Loss of function – Need two events (mutations) to inactivate front and rear brakes

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SDH-deficient cancers require two SDH mutations for cancer development

  • Two ‘inactivating’ SDH hits in order to become deficient
  • First hit

– Germline – Somatic – Epimutation

Banno et al 2012

Second hit

  • 1. Somatic
  • 2. Loss of heterozygosity
  • 3. Epimutation

1 2 3

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Inheriting a loss-of-function SDH mutation results in high life-time risk for tumor development

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Neumann et al., 2004; Bausch et al., 2017

PGL/PCC

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NIH clinic: Total of 95 WT GIST Pts Analyzed

Boikos et al., JAMA Oncology 2016

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NIH clinic: Total of 95 WT GIST Pts Analyzed

Boikos et al., JAMA Oncology 2016

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NIH clinic: Total of 95 GIST Pts Analyzed

Boikos et al., JAMA Oncology 2016

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NIH clinic: Total of 95 WT GIST Pts Analyzed

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NIH clinic: Total of 95 WT GIST Pts Analyzed

Boikos et al., JAMA Oncology 2016

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NIH clinic: Total of 95 GIST Pts Analyzed

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NIH clinic: Total of 95 WTGIST Pts Analyzed

Boikos et al., JAMA Oncology 2016

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SDH Deficient GIST

Janeway K, Inherited and Syndromic GIST. In: Gastrointestinal Stromal Tumors: Bench to Bedside (Scoggins CR, Raut CP, Mullen JT eds.) Based on Boikos S., JAMA Oncology 2016

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Frequency of SDHB-negative and SDHB-positive gastric GISTs as a function of age

Miettinen et. al Am J Surg Pathol. 2011

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SDH mutations and epimutations

  • Mutations have been found in all 4 SDH genes (A,B,C,D)
  • most of these are inherited
  • In addition, some pediatric GIST have silencing of SDHC by “epimutation”
  • hypermethylation of the SDHC promoter
  • this abnormality is not inherited
  • Why does this matter? SDH mutations and epimutations both lead to Carney

Triad (GIST, paraganglioma, pulmonary chondroma) and Carney-Stratakis syndrome (GIST, paraganglioma [PGL], pheochromoctyoma [PHEO])

  • These distinctions are important for genetic counseling and screening for

PGL/PHEO

  • Carney Triad: not inherited
  • Carney-Stratakis: usually inherited
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KIT ex8 0.1% KIT ex17 1.0% KIT ex13 2.0% KIT ex9 8.0% KIT ex11 66.0% PDGFRA ex14 0.1% PDGFRA ex12 2.0% PDGFRA ex18

  • ther

3.0% PDGFRA ex18 D842V 5.0% SDH mutation (A/B/C/D) 9.0% SDHC epimutation 1.0% BRAF V600E mutation 1.5% RAS mutation 0.1% NF1-related 0.1% RTK translocation 0.1% Unclassified 1.0%

Molecular Classification of GIST 2018 “No subgroup left behind”

Note: This data are compiled from series largely composed of adult patients

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Carney-Stratakis Syndrome :

  • GIST, paragangliomas
  • germline mutations in succinate dehydrogenase

Patterns of Mutant SDH inheritance

B E Baysal et al. J Med Genet 2002;39:178-183

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High risk of cancer for germline pathogenic SDH mutations

  • Early detection lead to surgical cure
  • Genetic screening to identify family members
  • Cancer screening for carriers
  • Yearly labs
  • Total body MRI (or CT) every 3-5 years
  • Upper endoscopy with endoscopic ultrasound every 3-5 years

Neumann et al., 2004

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Summary

  • Best pathology diagnostic screen is SDHB IHC
  • dSDH GISTs overwhelmingly gastric in location and most

are multifocal and/or metastatic at presentation

  • Implications for management
  • Recently identified: first small bowel dSDH GIST
  • dSDH GISTs rarely (but sometimes) respond to imatinib
  • Higher reported response rate to sunitinib and

regorafenib

  • likely due to effects on sunitinib and regorafenib on

VEGFR

  • Most SDH mutations are germline
  • Significant implications for genetic counseling,

prevention and early detection

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Future Directions

  • Continue to study patients with dSDH GIST
  • Identify genotype/phenotype correlations
  • Currently no validated cell lines or models!
  • We are still learning (first case of small intestine dSDH GIST

was just reported

  • Based on increased succinate/aKG ratios global DNA

hypermethylation + PHD inhibition “pseudo-hypoxic” state:

  • Test more potent DNMT inhibitors, e.g., SGI-110

(guadecitabine) study just opened at NCI

  • Combination therapy (maybe with anti-angiogenic drugs)
  • PARP inhibitors??
  • Understand natural history of disease
  • Develop prognostic marker (?cfDNA-hypermethylation)
  • “Metabolic” therapy to exploit the mitochondrial defect in

dSDH cells

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